miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6828 3' -44.8 NC_001875.2 + 47667 0.66 0.999994
Target:  5'- -cGCAcgGACGcgGCCGCGGc--GCGc -3'
miRNA:   3'- gaCGUuuUUGCaaUGGCGCUaaaCGU- -5'
6828 3' -44.8 NC_001875.2 + 130868 0.66 0.999994
Target:  5'- -gGCGA--GCGUcGCCGCG---UGCAa -3'
miRNA:   3'- gaCGUUuuUGCAaUGGCGCuaaACGU- -5'
6828 3' -44.8 NC_001875.2 + 10113 0.66 0.999994
Target:  5'- gUGCAAAAACGUcUGgCGCGGcaagUUUGaCGc -3'
miRNA:   3'- gACGUUUUUGCA-AUgGCGCU----AAAC-GU- -5'
6828 3' -44.8 NC_001875.2 + 130835 0.66 0.999994
Target:  5'- gCUGCAAGAACGggcCCGCagcaaugGCGu -3'
miRNA:   3'- -GACGUUUUUGCaauGGCGcuaaa--CGU- -5'
6828 3' -44.8 NC_001875.2 + 95239 0.66 0.999994
Target:  5'- gUGCAAGGGCGacgcgcagcgGCUGCGccgcauUUUGCAa -3'
miRNA:   3'- gACGUUUUUGCaa--------UGGCGCu-----AAACGU- -5'
6828 3' -44.8 NC_001875.2 + 16898 0.66 0.999994
Target:  5'- -cGCA---GCGgcGCCGCGAUgucGCu -3'
miRNA:   3'- gaCGUuuuUGCaaUGGCGCUAaa-CGu -5'
6828 3' -44.8 NC_001875.2 + 88987 0.66 0.999991
Target:  5'- cCUGCGccuGCGgcgcGCCG-GAUUUGCGc -3'
miRNA:   3'- -GACGUuuuUGCaa--UGGCgCUAAACGU- -5'
6828 3' -44.8 NC_001875.2 + 21041 0.66 0.999991
Target:  5'- cCUGCGc-GGCGUUGuauCCGUGGUcgGCGg -3'
miRNA:   3'- -GACGUuuUUGCAAU---GGCGCUAaaCGU- -5'
6828 3' -44.8 NC_001875.2 + 131675 0.66 0.999991
Target:  5'- uUGCAGAGccACGUguuuggcGCCGCGugccugccUUGCAg -3'
miRNA:   3'- gACGUUUU--UGCAa------UGGCGCua------AACGU- -5'
6828 3' -44.8 NC_001875.2 + 33540 0.66 0.999985
Target:  5'- aUGCAAGcacGCGUUggccacagugcggucGCCGCGGg--GCAc -3'
miRNA:   3'- gACGUUUu--UGCAA---------------UGGCGCUaaaCGU- -5'
6828 3' -44.8 NC_001875.2 + 4569 0.66 0.999983
Target:  5'- -gGCAAGcAAUGUUGCCGCGc--UGUc -3'
miRNA:   3'- gaCGUUU-UUGCAAUGGCGCuaaACGu -5'
6828 3' -44.8 NC_001875.2 + 97638 0.66 0.999983
Target:  5'- -cGCAGAAaacGCGUUcguguucacaACUGaCGAUUUGCu -3'
miRNA:   3'- gaCGUUUU---UGCAA----------UGGC-GCUAAACGu -5'
6828 3' -44.8 NC_001875.2 + 34526 0.66 0.999976
Target:  5'- -cGCAAuAAACuuucacUACgGCGAUUUGCAa -3'
miRNA:   3'- gaCGUU-UUUGca----AUGgCGCUAAACGU- -5'
6828 3' -44.8 NC_001875.2 + 7875 0.66 0.999976
Target:  5'- uUGCGAGAACaagcGCCGCGGcagUUUGUc -3'
miRNA:   3'- gACGUUUUUGcaa-UGGCGCU---AAACGu -5'
6828 3' -44.8 NC_001875.2 + 72065 0.66 0.999976
Target:  5'- gCUGCGAAAuuaagcacguCGUUgggcGCCGUGGUUUcGCGc -3'
miRNA:   3'- -GACGUUUUu---------GCAA----UGGCGCUAAA-CGU- -5'
6828 3' -44.8 NC_001875.2 + 22843 0.66 0.999976
Target:  5'- -cGC-GAAGCGUUugCGCGAccgaguugaUUGCGu -3'
miRNA:   3'- gaCGuUUUUGCAAugGCGCUa--------AACGU- -5'
6828 3' -44.8 NC_001875.2 + 62125 0.66 0.999976
Target:  5'- gUGCA--AACGUUAgCGCGAcgcGCGu -3'
miRNA:   3'- gACGUuuUUGCAAUgGCGCUaaaCGU- -5'
6828 3' -44.8 NC_001875.2 + 95057 0.67 0.999967
Target:  5'- gUGCAGAuugacgccGACGgguUugUGCGGUUUGUg -3'
miRNA:   3'- gACGUUU--------UUGCa--AugGCGCUAAACGu -5'
6828 3' -44.8 NC_001875.2 + 6752 0.67 0.999967
Target:  5'- -cGCAGcAACGaugUGCCGCGcAUUcGCGg -3'
miRNA:   3'- gaCGUUuUUGCa--AUGGCGC-UAAaCGU- -5'
6828 3' -44.8 NC_001875.2 + 10910 0.67 0.999966
Target:  5'- -cGCaAAAGugGUUcagccaaACCGCGGUgUUGCGc -3'
miRNA:   3'- gaCG-UUUUugCAA-------UGGCGCUA-AACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.