miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6828 5' -54.4 NC_001875.2 + 52664 0.66 0.929669
Target:  5'- -gUGCAAccacGACGCGuUUUUGGCCUaCCu -3'
miRNA:   3'- caGCGUU----UUGCGCcAGAACCGGGaGG- -5'
6828 5' -54.4 NC_001875.2 + 27867 0.66 0.929669
Target:  5'- aUgGCAAAACGCGGUauugcGGUCgUUCg -3'
miRNA:   3'- cAgCGUUUUGCGCCAgaa--CCGGgAGG- -5'
6828 5' -54.4 NC_001875.2 + 55724 0.66 0.929669
Target:  5'- -gCGCAaauacggccGAGCGUGGcCaugcGGCCCUCUu -3'
miRNA:   3'- caGCGU---------UUUGCGCCaGaa--CCGGGAGG- -5'
6828 5' -54.4 NC_001875.2 + 87290 0.67 0.912674
Target:  5'- uGUCGCAAcGCGCGG-CU--GCCCa-- -3'
miRNA:   3'- -CAGCGUUuUGCGCCaGAacCGGGagg -5'
6828 5' -54.4 NC_001875.2 + 21363 0.67 0.900113
Target:  5'- -gUGCuuGACGCGGUaCUugcgguUGGCCUUaCCc -3'
miRNA:   3'- caGCGuuUUGCGCCA-GA------ACCGGGA-GG- -5'
6828 5' -54.4 NC_001875.2 + 54895 0.67 0.893469
Target:  5'- cUCGCAcgGCGC-GUCUUcGUCCUCg -3'
miRNA:   3'- cAGCGUuuUGCGcCAGAAcCGGGAGg -5'
6828 5' -54.4 NC_001875.2 + 102188 0.67 0.886587
Target:  5'- -gCGUAcAGCGUGGUCUgguaGCCCaaaUCCg -3'
miRNA:   3'- caGCGUuUUGCGCCAGAac--CGGG---AGG- -5'
6828 5' -54.4 NC_001875.2 + 24007 0.68 0.882346
Target:  5'- cGUCGCAAGgcgcaccgggcgcggGCucgGCGGUCgcgUGGCUgUUCa -3'
miRNA:   3'- -CAGCGUUU---------------UG---CGCCAGa--ACCGGgAGG- -5'
6828 5' -54.4 NC_001875.2 + 13730 0.68 0.879472
Target:  5'- uUgGCGGcAAUGCGGUUgcgcaggcGGUCCUCCa -3'
miRNA:   3'- cAgCGUU-UUGCGCCAGaa------CCGGGAGG- -5'
6828 5' -54.4 NC_001875.2 + 18274 0.68 0.872129
Target:  5'- cGUCGac--ACGCGGUCgcacaaGGCCgCUUCg -3'
miRNA:   3'- -CAGCguuuUGCGCCAGaa----CCGG-GAGG- -5'
6828 5' -54.4 NC_001875.2 + 53145 0.68 0.856778
Target:  5'- aUUGUu--GCGCGGUgUUGGCCaC-CCg -3'
miRNA:   3'- cAGCGuuuUGCGCCAgAACCGG-GaGG- -5'
6828 5' -54.4 NC_001875.2 + 29286 0.68 0.848782
Target:  5'- --gGCGGGGCGCGGUCgugUGGCgUgUCg -3'
miRNA:   3'- cagCGUUUUGCGCCAGa--ACCG-GgAGg -5'
6828 5' -54.4 NC_001875.2 + 115888 0.68 0.848782
Target:  5'- --gGCAGGAUGCGGUCaaagugcUGGCgCC-CCg -3'
miRNA:   3'- cagCGUUUUGCGCCAGa------ACCG-GGaGG- -5'
6828 5' -54.4 NC_001875.2 + 21135 0.68 0.840583
Target:  5'- cGUUGCGaaagccacGAACGCGGc----GCCCUCCg -3'
miRNA:   3'- -CAGCGU--------UUUGCGCCagaacCGGGAGG- -5'
6828 5' -54.4 NC_001875.2 + 67869 0.69 0.832187
Target:  5'- cGUCGcCAGAuucugguucaGCGCGGUCggcgacaGcGCCUUCCu -3'
miRNA:   3'- -CAGC-GUUU----------UGCGCCAGaa-----C-CGGGAGG- -5'
6828 5' -54.4 NC_001875.2 + 72589 0.69 0.805898
Target:  5'- -gUGCGGGcGCuGCGGgcgCUUGGgCCUCCa -3'
miRNA:   3'- caGCGUUU-UG-CGCCa--GAACCgGGAGG- -5'
6828 5' -54.4 NC_001875.2 + 73353 0.7 0.778139
Target:  5'- -aCGCA--GCGCGGUCUcguUGGCCacaCa -3'
miRNA:   3'- caGCGUuuUGCGCCAGA---ACCGGgagG- -5'
6828 5' -54.4 NC_001875.2 + 93073 0.7 0.749159
Target:  5'- -gCGguGGAUGCGGUCUUGcGCCUgcagCUc -3'
miRNA:   3'- caGCguUUUGCGCCAGAAC-CGGGa---GG- -5'
6828 5' -54.4 NC_001875.2 + 7395 0.71 0.692696
Target:  5'- gGUUGCGcGACGCGGUCgcaaaacauauugGGCCCa-- -3'
miRNA:   3'- -CAGCGUuUUGCGCCAGaa-----------CCGGGagg -5'
6828 5' -54.4 NC_001875.2 + 18436 0.72 0.667895
Target:  5'- -gCGCGAGGCGCGGUCcgcgUGGCgCg-- -3'
miRNA:   3'- caGCGUUUUGCGCCAGa---ACCGgGagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.