miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6829 3' -60.5 NC_001875.2 + 164 0.66 0.663972
Target:  5'- --cGCGGCGCCAaacacGUGGCU-CUGCAa -3'
miRNA:   3'- cacCGCCGCGGUa----CGCCGGuGAUGUg -5'
6829 3' -60.5 NC_001875.2 + 12763 0.66 0.663972
Target:  5'- gGUGGCGGUuguuguccaGCCGggGCG-CCGC-GCACa -3'
miRNA:   3'- -CACCGCCG---------CGGUa-CGCcGGUGaUGUG- -5'
6829 3' -60.5 NC_001875.2 + 18649 0.66 0.662959
Target:  5'- cUGGUGggcacgucgcagcGCGUCAcggUGCGGCUGCUGgGCg -3'
miRNA:   3'- cACCGC-------------CGCGGU---ACGCCGGUGAUgUG- -5'
6829 3' -60.5 NC_001875.2 + 80646 0.66 0.659918
Target:  5'- -gGGCGGCGCCAgaaccgcgccgucGUGGgCAaacugGCGCa -3'
miRNA:   3'- caCCGCCGCGGUa------------CGCCgGUga---UGUG- -5'
6829 3' -60.5 NC_001875.2 + 11962 0.66 0.653832
Target:  5'- -cGGCGGCGCguUGCaaagcacuGGCgACggcguuggGCGCg -3'
miRNA:   3'- caCCGCCGCGguACG--------CCGgUGa-------UGUG- -5'
6829 3' -60.5 NC_001875.2 + 113612 0.66 0.653832
Target:  5'- -cGGCGGCggGCCGcgGCGGCaagaGCggcgacgGCGCc -3'
miRNA:   3'- caCCGCCG--CGGUa-CGCCGg---UGa------UGUG- -5'
6829 3' -60.5 NC_001875.2 + 126833 0.66 0.653832
Target:  5'- -aGGCGGCGCaaaGUGCacaaguGCCGC-ACAg -3'
miRNA:   3'- caCCGCCGCGg--UACGc-----CGGUGaUGUg -5'
6829 3' -60.5 NC_001875.2 + 114357 0.66 0.653832
Target:  5'- -cGGCGucCGCCAacuUGCuGGCCAUaACACc -3'
miRNA:   3'- caCCGCc-GCGGU---ACG-CCGGUGaUGUG- -5'
6829 3' -60.5 NC_001875.2 + 29457 0.66 0.643675
Target:  5'- cUGGCG--GCCAUGCGGCUcggcuccaaaaACUGgACg -3'
miRNA:   3'- cACCGCcgCGGUACGCCGG-----------UGAUgUG- -5'
6829 3' -60.5 NC_001875.2 + 42943 0.66 0.643675
Target:  5'- cGUGGCGuGCGUCA-GCaGCCcGCgcaGCGCg -3'
miRNA:   3'- -CACCGC-CGCGGUaCGcCGG-UGa--UGUG- -5'
6829 3' -60.5 NC_001875.2 + 31248 0.66 0.643675
Target:  5'- -cGGcCGGCGCCcgGC--CCGCgUACGCg -3'
miRNA:   3'- caCC-GCCGCGGuaCGccGGUG-AUGUG- -5'
6829 3' -60.5 NC_001875.2 + 26609 0.66 0.643675
Target:  5'- ---cUGGCGCCAUGacaGGCCGCccaaGCAUg -3'
miRNA:   3'- caccGCCGCGGUACg--CCGGUGa---UGUG- -5'
6829 3' -60.5 NC_001875.2 + 77391 0.66 0.642659
Target:  5'- cUGuGCGGCGCC--GCGGCUaacgaccGCcACGCg -3'
miRNA:   3'- cAC-CGCCGCGGuaCGCCGG-------UGaUGUG- -5'
6829 3' -60.5 NC_001875.2 + 105238 0.66 0.642659
Target:  5'- -cGGCcugucauGGCGCCAggugUGCGGgCGCUGuuuCACc -3'
miRNA:   3'- caCCG-------CCGCGGU----ACGCCgGUGAU---GUG- -5'
6829 3' -60.5 NC_001875.2 + 79257 0.66 0.637576
Target:  5'- gGUGGUGGCGCgcguggagacgauguCAaugucUGUGGCgCGCgUGCGCg -3'
miRNA:   3'- -CACCGCCGCG---------------GU-----ACGCCG-GUG-AUGUG- -5'
6829 3' -60.5 NC_001875.2 + 18276 0.66 0.63351
Target:  5'- aUGGC-GCGCCGUGCG-CgACcGCGCc -3'
miRNA:   3'- cACCGcCGCGGUACGCcGgUGaUGUG- -5'
6829 3' -60.5 NC_001875.2 + 65510 0.66 0.63351
Target:  5'- --cGCGGCGUUucuuacgGCGGCCGCccACGCc -3'
miRNA:   3'- cacCGCCGCGGua-----CGCCGGUGa-UGUG- -5'
6829 3' -60.5 NC_001875.2 + 45646 0.66 0.63351
Target:  5'- -cGGCGGCGCCucuaguuuUGCGuaCA--GCGCg -3'
miRNA:   3'- caCCGCCGCGGu-------ACGCcgGUgaUGUG- -5'
6829 3' -60.5 NC_001875.2 + 8499 0.66 0.63351
Target:  5'- -gGGCGcCGuCCGUGUGGgCGCcGCGCa -3'
miRNA:   3'- caCCGCcGC-GGUACGCCgGUGaUGUG- -5'
6829 3' -60.5 NC_001875.2 + 99364 0.66 0.63351
Target:  5'- -gGGCGcGCccGCCAaGUGGCCAaaGCGCc -3'
miRNA:   3'- caCCGC-CG--CGGUaCGCCGGUgaUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.