miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6829 5' -54.2 NC_001875.2 + 69619 0.66 0.934558
Target:  5'- aACGUGCuGUUggCGCGcgAGGUGgacGCCGu -3'
miRNA:   3'- -UGCACGuCAAuaGCGUa-UCCGC---CGGU- -5'
6829 5' -54.2 NC_001875.2 + 20909 0.66 0.934558
Target:  5'- cCGUcGCAuuguUCGUGUGGGCGcGCCAu -3'
miRNA:   3'- uGCA-CGUcaauAGCGUAUCCGC-CGGU- -5'
6829 5' -54.2 NC_001875.2 + 13732 0.66 0.934558
Target:  5'- gGCGgcaaUGCGGUUG-CGC--AGGCGGUCc -3'
miRNA:   3'- -UGC----ACGUCAAUaGCGuaUCCGCCGGu -5'
6829 5' -54.2 NC_001875.2 + 110743 0.66 0.934558
Target:  5'- cGCGUGCAGUUuaagCGC---GGCGaccGCCGc -3'
miRNA:   3'- -UGCACGUCAAua--GCGuauCCGC---CGGU- -5'
6829 5' -54.2 NC_001875.2 + 49740 0.66 0.929303
Target:  5'- cACGUcGCcGUaGUCGC-UGGuGCGGCCc -3'
miRNA:   3'- -UGCA-CGuCAaUAGCGuAUC-CGCCGGu -5'
6829 5' -54.2 NC_001875.2 + 97517 0.66 0.928763
Target:  5'- uCGUGCguuucgucuucggGGUgggCGCGUuuGGUGGCCAu -3'
miRNA:   3'- uGCACG-------------UCAauaGCGUAu-CCGCCGGU- -5'
6829 5' -54.2 NC_001875.2 + 128914 0.66 0.923791
Target:  5'- aGCGcGCGGUgaauUUGCAcgAGGCGGUgAa -3'
miRNA:   3'- -UGCaCGUCAau--AGCGUa-UCCGCCGgU- -5'
6829 5' -54.2 NC_001875.2 + 47333 0.66 0.923791
Target:  5'- cACGUGC---UGUCGgc--GGCGGCCAa -3'
miRNA:   3'- -UGCACGucaAUAGCguauCCGCCGGU- -5'
6829 5' -54.2 NC_001875.2 + 89294 0.66 0.923791
Target:  5'- -gGUGUAGUggcCGCAUGGcGCcGCCAc -3'
miRNA:   3'- ugCACGUCAauaGCGUAUC-CGcCGGU- -5'
6829 5' -54.2 NC_001875.2 + 125741 0.66 0.923791
Target:  5'- gACGaGCAGUguUUGU--GGGCGGCUAu -3'
miRNA:   3'- -UGCaCGUCAauAGCGuaUCCGCCGGU- -5'
6829 5' -54.2 NC_001875.2 + 40160 0.66 0.922659
Target:  5'- cACGgccgGCAacgcgaugCGCAUGGGCGuGCCGu -3'
miRNA:   3'- -UGCa---CGUcaaua---GCGUAUCCGC-CGGU- -5'
6829 5' -54.2 NC_001875.2 + 3209 0.66 0.918026
Target:  5'- uGCGgcgGCGGUUggAUgGCGUGGGCGcGUUg -3'
miRNA:   3'- -UGCa--CGUCAA--UAgCGUAUCCGC-CGGu -5'
6829 5' -54.2 NC_001875.2 + 124557 0.66 0.918026
Target:  5'- gGCG-GCGGg-GUCGCuuuGGCGGCaCAc -3'
miRNA:   3'- -UGCaCGUCaaUAGCGuauCCGCCG-GU- -5'
6829 5' -54.2 NC_001875.2 + 27600 0.66 0.918026
Target:  5'- -aGUGCAaacugcguUCGCAUAGGCaGCUAu -3'
miRNA:   3'- ugCACGUcaau----AGCGUAUCCGcCGGU- -5'
6829 5' -54.2 NC_001875.2 + 39104 0.66 0.912005
Target:  5'- aACGcUGCAGUUccgCGCuccauGGCGGCg- -3'
miRNA:   3'- -UGC-ACGUCAAua-GCGuau--CCGCCGgu -5'
6829 5' -54.2 NC_001875.2 + 128311 0.67 0.899209
Target:  5'- uACGUGuCGGcaGUCaCGUAGGCcGGCCu -3'
miRNA:   3'- -UGCAC-GUCaaUAGcGUAUCCG-CCGGu -5'
6829 5' -54.2 NC_001875.2 + 93266 0.67 0.899209
Target:  5'- aACGUGUuuUUGuUUGC--GGGCGGCCAc -3'
miRNA:   3'- -UGCACGucAAU-AGCGuaUCCGCCGGU- -5'
6829 5' -54.2 NC_001875.2 + 33438 0.67 0.892438
Target:  5'- uCGUGC-GUgagCGCGUucAGcGCGGCCGg -3'
miRNA:   3'- uGCACGuCAauaGCGUA--UC-CGCCGGU- -5'
6829 5' -54.2 NC_001875.2 + 102930 0.67 0.892438
Target:  5'- cGCGgccaCGGUcuUGUUGUggGGGCGGCCGg -3'
miRNA:   3'- -UGCac--GUCA--AUAGCGuaUCCGCCGGU- -5'
6829 5' -54.2 NC_001875.2 + 37051 0.67 0.878171
Target:  5'- cGCGUGCAcgcg-CGCGgacGCGGCCAc -3'
miRNA:   3'- -UGCACGUcaauaGCGUaucCGCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.