Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
683 | 5' | -63.3 | AC_000018.1 | + | 12730 | 1.07 | 0.000119 |
Target: 5'- cAGCACCCAGCCCGCCAACGUGCCCCGu -3' miRNA: 3'- -UCGUGGGUCGGGCGGUUGCACGGGGC- -5' |
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683 | 5' | -63.3 | AC_000018.1 | + | 11020 | 0.66 | 0.21566 |
Target: 5'- cGGCACCC-GCCCaGCCGACuu-CUCCa -3' miRNA: 3'- -UCGUGGGuCGGG-CGGUUGcacGGGGc -5' |
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683 | 5' | -63.3 | AC_000018.1 | + | 10651 | 0.67 | 0.183709 |
Target: 5'- cGCGCCCguAGUcuggagaauuaaUCGCCAGgguugcguugcggUGUGCCCCGg -3' miRNA: 3'- uCGUGGG--UCG------------GGCGGUU-------------GCACGGGGC- -5' |
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683 | 5' | -63.3 | AC_000018.1 | + | 12587 | 0.67 | 0.179365 |
Target: 5'- gAGCGCgUGGCCCGUuacaacagcagCAACGUGCaaaCCa -3' miRNA: 3'- -UCGUGgGUCGGGCG-----------GUUGCACGg--GGc -5' |
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683 | 5' | -63.3 | AC_000018.1 | + | 11595 | 0.69 | 0.133243 |
Target: 5'- cGCACCCugaucGCCCGCgAGgaaGUGaCCCUGg -3' miRNA: 3'- uCGUGGGu----CGGGCGgUUg--CAC-GGGGC- -5' |
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683 | 5' | -63.3 | AC_000018.1 | + | 25400 | 0.7 | 0.116111 |
Target: 5'- cGGUAUCCuGCCUGCCAccugcuguGCGcUGCCCUc -3' miRNA: 3'- -UCGUGGGuCGGGCGGU--------UGC-ACGGGGc -5' |
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683 | 5' | -63.3 | AC_000018.1 | + | 1427 | 0.71 | 0.095561 |
Target: 5'- uAGUACCCGGaaaCUGCCAAggcaauaaGUGCCCUGc -3' miRNA: 3'- -UCGUGGGUCg--GGCGGUUg-------CACGGGGC- -5' |
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683 | 5' | -63.3 | AC_000018.1 | + | 8520 | 0.66 | 0.227129 |
Target: 5'- -aCugCCAGCCaUGCCGcCGgGUCCCGa -3' miRNA: 3'- ucGugGGUCGG-GCGGUuGCaCGGGGC- -5' |
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683 | 5' | -63.3 | AC_000018.1 | + | 17920 | 0.67 | 0.194207 |
Target: 5'- aGGCGCCCccguucaguuGGCUCguGCCGAUGUcGCUCCa -3' miRNA: 3'- -UCGUGGG----------UCGGG--CGGUUGCA-CGGGGc -5' |
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683 | 5' | -63.3 | AC_000018.1 | + | 18742 | 0.67 | 0.178888 |
Target: 5'- aAGCAUCCuGUCCGgCGAUGUGCauguaugCCCa -3' miRNA: 3'- -UCGUGGGuCGGGCgGUUGCACG-------GGGc -5' |
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683 | 5' | -63.3 | AC_000018.1 | + | 9322 | 0.69 | 0.148593 |
Target: 5'- cGUcuGCCCGuGCgCCGCCGGCGUcGCCgCGu -3' miRNA: 3'- uCG--UGGGU-CG-GGCGGUUGCA-CGGgGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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