miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6830 3' -55.4 NC_001875.2 + 13301 0.66 0.911577
Target:  5'- uCGuCGACGCCGuugaGCGCCUUcagUUCCAc -3'
miRNA:   3'- cGC-GCUGCGGUuga-CGUGGAA---AGGGU- -5'
6830 3' -55.4 NC_001875.2 + 115759 0.66 0.911577
Target:  5'- gGCGUG-CGCCAAaccgGCGCCgugugcgUCCaCAg -3'
miRNA:   3'- -CGCGCuGCGGUUga--CGUGGaa-----AGG-GU- -5'
6830 3' -55.4 NC_001875.2 + 62722 0.66 0.911577
Target:  5'- uGCGCGuCGCCAAUgucggccguaaUGUACgUguggCCCGc -3'
miRNA:   3'- -CGCGCuGCGGUUG-----------ACGUGgAaa--GGGU- -5'
6830 3' -55.4 NC_001875.2 + 77668 0.66 0.91097
Target:  5'- aCGCGuuuuGCGCCAGCggGCAgCUUuacucuaUCCCc -3'
miRNA:   3'- cGCGC----UGCGGUUGa-CGUgGAA-------AGGGu -5'
6830 3' -55.4 NC_001875.2 + 37377 0.66 0.905396
Target:  5'- cGCGCG-CGCC-GCUGCAg--UUUCCGc -3'
miRNA:   3'- -CGCGCuGCGGuUGACGUggaAAGGGU- -5'
6830 3' -55.4 NC_001875.2 + 22584 0.66 0.905396
Target:  5'- gGCGCGGCgcguuggccgGCCGGCUGUACggUUUCg- -3'
miRNA:   3'- -CGCGCUG----------CGGUUGACGUGgaAAGGgu -5'
6830 3' -55.4 NC_001875.2 + 18491 0.66 0.905396
Target:  5'- cGCaGCGACG-CAGCcGCGCCcgaCCCGc -3'
miRNA:   3'- -CG-CGCUGCgGUUGaCGUGGaaaGGGU- -5'
6830 3' -55.4 NC_001875.2 + 4528 0.66 0.905396
Target:  5'- gGCGCacCGCCGGCUGCGg--UUCCUg -3'
miRNA:   3'- -CGCGcuGCGGUUGACGUggaAAGGGu -5'
6830 3' -55.4 NC_001875.2 + 69200 0.66 0.905396
Target:  5'- uGCGCGGCGCCGACggccaGUACgCUUg---- -3'
miRNA:   3'- -CGCGCUGCGGUUGa----CGUG-GAAagggu -5'
6830 3' -55.4 NC_001875.2 + 70328 0.66 0.905396
Target:  5'- aGCGCGAgcaCGCgGACUGCggcGCCgagCCg- -3'
miRNA:   3'- -CGCGCU---GCGgUUGACG---UGGaaaGGgu -5'
6830 3' -55.4 NC_001875.2 + 50500 0.66 0.905396
Target:  5'- cGCGCGGCaCCAGC-GCGCCg--CgCGg -3'
miRNA:   3'- -CGCGCUGcGGUUGaCGUGGaaaGgGU- -5'
6830 3' -55.4 NC_001875.2 + 66059 0.66 0.905396
Target:  5'- cGCGcCGACGCCG-C-GCGCgUgcucgCCCAg -3'
miRNA:   3'- -CGC-GCUGCGGUuGaCGUGgAaa---GGGU- -5'
6830 3' -55.4 NC_001875.2 + 72128 0.66 0.898974
Target:  5'- aGCGCGA-GCC-GCUGCucgcucGCCag-CCCAa -3'
miRNA:   3'- -CGCGCUgCGGuUGACG------UGGaaaGGGU- -5'
6830 3' -55.4 NC_001875.2 + 119553 0.66 0.898974
Target:  5'- -gGCGGCguGCCGGCUGCACaCgguggCCUg -3'
miRNA:   3'- cgCGCUG--CGGUUGACGUG-Gaaa--GGGu -5'
6830 3' -55.4 NC_001875.2 + 88927 0.66 0.898974
Target:  5'- cUGCGACGCCcacggcaugcGGCUGCACag--CCUc -3'
miRNA:   3'- cGCGCUGCGG----------UUGACGUGgaaaGGGu -5'
6830 3' -55.4 NC_001875.2 + 73792 0.66 0.898974
Target:  5'- -gGCGGCGgCGGCUggaacggcagcGCGCCg--CCCAc -3'
miRNA:   3'- cgCGCUGCgGUUGA-----------CGUGGaaaGGGU- -5'
6830 3' -55.4 NC_001875.2 + 124469 0.66 0.898974
Target:  5'- cCGCGugGCCGauccggcgggcACUGCACCgcaggCUa- -3'
miRNA:   3'- cGCGCugCGGU-----------UGACGUGGaaa--GGgu -5'
6830 3' -55.4 NC_001875.2 + 89694 0.66 0.898974
Target:  5'- cGCGCGACgGCCGAC-GCGuCCaUUgCUAg -3'
miRNA:   3'- -CGCGCUG-CGGUUGaCGU-GGaAAgGGU- -5'
6830 3' -55.4 NC_001875.2 + 109257 0.66 0.898974
Target:  5'- aGC-CGGCcgGCCAAC-GCGCCgcgCCCGg -3'
miRNA:   3'- -CGcGCUG--CGGUUGaCGUGGaaaGGGU- -5'
6830 3' -55.4 NC_001875.2 + 65486 0.66 0.898974
Target:  5'- --uCGACGCCGACUggaugcGCGCCU--UCCAg -3'
miRNA:   3'- cgcGCUGCGGUUGA------CGUGGAaaGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.