miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6830 5' -57.8 NC_001875.2 + 98861 0.66 0.827916
Target:  5'- cCGCGAGuugguGGCGCUAaug-UGCgCG-GGCg -3'
miRNA:   3'- -GCGCUC-----CCGCGGUgaaaACG-GCaCCG- -5'
6830 5' -57.8 NC_001875.2 + 56296 0.66 0.827916
Target:  5'- uCGuCGAuGGCGCCcaaGCguaugGCgGUGGCg -3'
miRNA:   3'- -GC-GCUcCCGCGG---UGaaaa-CGgCACCG- -5'
6830 5' -57.8 NC_001875.2 + 48830 0.66 0.827916
Target:  5'- gCGCGcuacGGCGCCGCUUcaaGCCcgccGGCg -3'
miRNA:   3'- -GCGCuc--CCGCGGUGAAaa-CGGca--CCG- -5'
6830 5' -57.8 NC_001875.2 + 43603 0.66 0.819436
Target:  5'- aGCGGcGGcgcGCGCCGCUUgcGCCGUuuuuGCc -3'
miRNA:   3'- gCGCU-CC---CGCGGUGAAaaCGGCAc---CG- -5'
6830 5' -57.8 NC_001875.2 + 61592 0.66 0.819436
Target:  5'- gGCGAcggcucGGGCGCCggcggcGCUUcggGCUGUgucGGCg -3'
miRNA:   3'- gCGCU------CCCGCGG------UGAAaa-CGGCA---CCG- -5'
6830 5' -57.8 NC_001875.2 + 15945 0.66 0.819436
Target:  5'- gGCG-GGGCGCCagcACUUUgaccgauccUGCCc-GGCc -3'
miRNA:   3'- gCGCuCCCGCGG---UGAAA---------ACGGcaCCG- -5'
6830 5' -57.8 NC_001875.2 + 82987 0.66 0.810786
Target:  5'- uCGC---GGCGCCGCUcgUcGCCGgcgGGCu -3'
miRNA:   3'- -GCGcucCCGCGGUGAaaA-CGGCa--CCG- -5'
6830 5' -57.8 NC_001875.2 + 29533 0.66 0.809913
Target:  5'- gCGCGAuuaguucGGGCuaCGacaaaaUUGCCGUGGUg -3'
miRNA:   3'- -GCGCU-------CCCGcgGUgaa---AACGGCACCG- -5'
6830 5' -57.8 NC_001875.2 + 68929 0.66 0.801976
Target:  5'- uGCGAGGGCcgGCCggACgggUUUGUguUGGCc -3'
miRNA:   3'- gCGCUCCCG--CGG--UGa--AAACGgcACCG- -5'
6830 5' -57.8 NC_001875.2 + 11984 0.66 0.801976
Target:  5'- gGCGAcGGCGUugggCGCgggUGUgGUGGCg -3'
miRNA:   3'- gCGCUcCCGCG----GUGaaaACGgCACCG- -5'
6830 5' -57.8 NC_001875.2 + 19876 0.66 0.801976
Target:  5'- gGCGcGGGCGCCG--UUUGCgaaacgCGUGcGCu -3'
miRNA:   3'- gCGCuCCCGCGGUgaAAACG------GCAC-CG- -5'
6830 5' -57.8 NC_001875.2 + 43909 0.66 0.783907
Target:  5'- gGCG-GGGCGU-----UUGCgGUGGCa -3'
miRNA:   3'- gCGCuCCCGCGgugaaAACGgCACCG- -5'
6830 5' -57.8 NC_001875.2 + 37112 0.67 0.774665
Target:  5'- uGCGGGcgcGGCGCCGCgccggcgUUUGCgucuuuccgCGUGcGCa -3'
miRNA:   3'- gCGCUC---CCGCGGUGa------AAACG---------GCAC-CG- -5'
6830 5' -57.8 NC_001875.2 + 104133 0.67 0.774665
Target:  5'- gCGCGccguGGGGC-CCAUUc---CCGUGGCg -3'
miRNA:   3'- -GCGC----UCCCGcGGUGAaaacGGCACCG- -5'
6830 5' -57.8 NC_001875.2 + 54938 0.67 0.766239
Target:  5'- uCGCu-GGGCGCCGCcccuuugcgcgcgcgUUUGCCGgacGCg -3'
miRNA:   3'- -GCGcuCCCGCGGUGa--------------AAACGGCac-CG- -5'
6830 5' -57.8 NC_001875.2 + 51937 0.67 0.765297
Target:  5'- aGCGuGcGGCGCUACUUUgggcgcgacgUGCCGcacGCg -3'
miRNA:   3'- gCGCuC-CCGCGGUGAAA----------ACGGCac-CG- -5'
6830 5' -57.8 NC_001875.2 + 31691 0.67 0.765297
Target:  5'- gGCGuGGacCGCCGCUUgcgcGCCGccGGCg -3'
miRNA:   3'- gCGCuCCc-GCGGUGAAaa--CGGCa-CCG- -5'
6830 5' -57.8 NC_001875.2 + 68581 0.67 0.765297
Target:  5'- cCGCGu-GGCGCCGCUg--GCCGccGaGCc -3'
miRNA:   3'- -GCGCucCCGCGGUGAaaaCGGCa-C-CG- -5'
6830 5' -57.8 NC_001875.2 + 81805 0.67 0.765297
Target:  5'- aGCGAcGGGCcgGCCGCcuc-GCCGcccGGCg -3'
miRNA:   3'- gCGCU-CCCG--CGGUGaaaaCGGCa--CCG- -5'
6830 5' -57.8 NC_001875.2 + 55350 0.67 0.765297
Target:  5'- -uCGGGGGCGCCGCcucgucGUCGUccgcGGCc -3'
miRNA:   3'- gcGCUCCCGCGGUGaaaa--CGGCA----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.