miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6831 3' -59 NC_001875.2 + 43783 0.66 0.786906
Target:  5'- gGCCCGCUGcUGGcGACaaaCUUGAGCg -3'
miRNA:   3'- -CGGGUGGCuGCCcCUGgucGAACUCG- -5'
6831 3' -59 NC_001875.2 + 95067 0.66 0.777829
Target:  5'- --aCGCCGACGGGuuuGugCGGUUUGuGUu -3'
miRNA:   3'- cggGUGGCUGCCC---CugGUCGAACuCG- -5'
6831 3' -59 NC_001875.2 + 39402 0.66 0.768626
Target:  5'- uGUgCACCGACuGcGACCAGCUUuuuGCa -3'
miRNA:   3'- -CGgGUGGCUGcCcCUGGUCGAAcu-CG- -5'
6831 3' -59 NC_001875.2 + 110934 0.66 0.759305
Target:  5'- cGCCCACacgaacaaugCGACGGGcuGGCgCuGCagGAGCa -3'
miRNA:   3'- -CGGGUG----------GCUGCCC--CUG-GuCGaaCUCG- -5'
6831 3' -59 NC_001875.2 + 35622 0.66 0.759305
Target:  5'- cGCCCaacGCCGACGcGGACUaucuGGCgc-AGCg -3'
miRNA:   3'- -CGGG---UGGCUGCcCCUGG----UCGaacUCG- -5'
6831 3' -59 NC_001875.2 + 15191 0.66 0.759305
Target:  5'- gGCCCACgUGAUGGuGGCCAGCacguacGGCc -3'
miRNA:   3'- -CGGGUG-GCUGCCcCUGGUCGaac---UCG- -5'
6831 3' -59 NC_001875.2 + 110434 0.66 0.759305
Target:  5'- cGCgaCACC-ACGGuGGACCAaaugcGCUUGgAGCu -3'
miRNA:   3'- -CGg-GUGGcUGCC-CCUGGU-----CGAAC-UCG- -5'
6831 3' -59 NC_001875.2 + 11025 0.66 0.749876
Target:  5'- uGCCUGCCcauGAUGGGcGACCAGUUUcaccacGCg -3'
miRNA:   3'- -CGGGUGG---CUGCCC-CUGGUCGAAcu----CG- -5'
6831 3' -59 NC_001875.2 + 3086 0.66 0.748927
Target:  5'- cGCCCA-CGGCGugcacgcgccGGGGCgCGGCUcgcggcgcagaccUGGGCg -3'
miRNA:   3'- -CGGGUgGCUGC----------CCCUG-GUCGA-------------ACUCG- -5'
6831 3' -59 NC_001875.2 + 2301 0.66 0.740346
Target:  5'- gGCCCGCCGugGagcauacGGACggcaaCAGCacGGGCa -3'
miRNA:   3'- -CGGGUGGCugCc------CCUG-----GUCGaaCUCG- -5'
6831 3' -59 NC_001875.2 + 111907 0.66 0.740346
Target:  5'- cGCCgGCCGcuccguguACGGgccGGugCAGCUgccguacGAGCa -3'
miRNA:   3'- -CGGgUGGC--------UGCC---CCugGUCGAa------CUCG- -5'
6831 3' -59 NC_001875.2 + 7425 0.66 0.740346
Target:  5'- gGCCCAaCGACGaGGGcaacugcgcGCCGGCgaUUGcGGCg -3'
miRNA:   3'- -CGGGUgGCUGC-CCC---------UGGUCG--AAC-UCG- -5'
6831 3' -59 NC_001875.2 + 48851 0.67 0.730726
Target:  5'- aGCCCGCCGGCGacGAgCGGCgccgcGAGg -3'
miRNA:   3'- -CGGGUGGCUGCccCUgGUCGaa---CUCg -5'
6831 3' -59 NC_001875.2 + 29278 0.67 0.730726
Target:  5'- aCCgCGCCGGCGGGG-CgCGGUcgUGuGGCg -3'
miRNA:   3'- cGG-GUGGCUGCCCCuG-GUCGa-AC-UCG- -5'
6831 3' -59 NC_001875.2 + 50373 0.67 0.721022
Target:  5'- cGCgCCACUGACcGcGGACCAGCgUGuacuuuuuGCg -3'
miRNA:   3'- -CG-GGUGGCUGcC-CCUGGUCGaACu-------CG- -5'
6831 3' -59 NC_001875.2 + 65742 0.67 0.711246
Target:  5'- cGCCCGCCGcGCGGGccUCGGCguauucgUGcGCg -3'
miRNA:   3'- -CGGGUGGC-UGCCCcuGGUCGa------ACuCG- -5'
6831 3' -59 NC_001875.2 + 48380 0.67 0.691506
Target:  5'- cGCCCGuCCGACGcGGcgacagguGCCGGCUcggGAGa -3'
miRNA:   3'- -CGGGU-GGCUGCcCC--------UGGUCGAa--CUCg -5'
6831 3' -59 NC_001875.2 + 30948 0.67 0.691506
Target:  5'- cGCgCugCGGCGcccGGACCGGCUUacGCg -3'
miRNA:   3'- -CGgGugGCUGCc--CCUGGUCGAAcuCG- -5'
6831 3' -59 NC_001875.2 + 110252 0.68 0.671574
Target:  5'- aGCUguUCGaACGGcuGGGCCGGCUggccgcgGAGCg -3'
miRNA:   3'- -CGGguGGC-UGCC--CCUGGUCGAa------CUCG- -5'
6831 3' -59 NC_001875.2 + 66107 0.68 0.671574
Target:  5'- gGCCCGCgCGGCGGGcGGCgaGGC---GGCg -3'
miRNA:   3'- -CGGGUG-GCUGCCC-CUGg-UCGaacUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.