miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6831 5' -55.8 NC_001875.2 + 130118 0.66 0.898209
Target:  5'- gGCgGCGCGACCGGUgucgcgCCCgcagCAUUuguggccacagaaGAGGGc -3'
miRNA:   3'- -CG-CGCGUUGGCCA------GGGa---GUAG-------------UUCCU- -5'
6831 5' -55.8 NC_001875.2 + 81304 0.66 0.892251
Target:  5'- cGCGCGCcGCCGGcggcgccuccUCCUCGUCAu--- -3'
miRNA:   3'- -CGCGCGuUGGCCa---------GGGAGUAGUuccu -5'
6831 5' -55.8 NC_001875.2 + 37180 0.66 0.885412
Target:  5'- cCGCGC-GCUGG-CCCauuUCAuguUCGAGGAa -3'
miRNA:   3'- cGCGCGuUGGCCaGGG---AGU---AGUUCCU- -5'
6831 5' -55.8 NC_001875.2 + 3465 0.66 0.885412
Target:  5'- -aGCuGCAACCGGUgCCUCuugugaacgguuGUCAAGu- -3'
miRNA:   3'- cgCG-CGUUGGCCAgGGAG------------UAGUUCcu -5'
6831 5' -55.8 NC_001875.2 + 66357 0.66 0.878346
Target:  5'- gGCGCGCAuCCaGUCgg-CGUCGAGGu -3'
miRNA:   3'- -CGCGCGUuGGcCAGggaGUAGUUCCu -5'
6831 5' -55.8 NC_001875.2 + 5519 0.67 0.871057
Target:  5'- cGCGCGCAguuuacGCCGG-CCgC-CGUUGAGGc -3'
miRNA:   3'- -CGCGCGU------UGGCCaGG-GaGUAGUUCCu -5'
6831 5' -55.8 NC_001875.2 + 4938 0.67 0.855834
Target:  5'- --cCGCGGCCGuGUUCCUCAUUGuGGGg -3'
miRNA:   3'- cgcGCGUUGGC-CAGGGAGUAGUuCCU- -5'
6831 5' -55.8 NC_001875.2 + 13529 0.69 0.749403
Target:  5'- aGCGCGCGGCCGGcCgCCUCGa------ -3'
miRNA:   3'- -CGCGCGUUGGCCaG-GGAGUaguuccu -5'
6831 5' -55.8 NC_001875.2 + 48637 0.69 0.749403
Target:  5'- uGCuGCGCAGCCaGUCgCUgGUguGGGAg -3'
miRNA:   3'- -CG-CGCGUUGGcCAGgGAgUAguUCCU- -5'
6831 5' -55.8 NC_001875.2 + 124413 0.69 0.729779
Target:  5'- gGCGCGCAGuuG--CCCUCGUCGuuGGGc -3'
miRNA:   3'- -CGCGCGUUggCcaGGGAGUAGUu-CCU- -5'
6831 5' -55.8 NC_001875.2 + 120800 0.71 0.65786
Target:  5'- uGCGCGCGuggugaaACUGGUCgCC-CAUCAuGGGc -3'
miRNA:   3'- -CGCGCGU-------UGGCCAG-GGaGUAGUuCCU- -5'
6831 5' -55.8 NC_001875.2 + 89938 0.72 0.60638
Target:  5'- uGCGCuCAACCGaGgcuccggcuacuuUCCCUCGUaCAGGGAg -3'
miRNA:   3'- -CGCGcGUUGGC-C-------------AGGGAGUA-GUUCCU- -5'
6831 5' -55.8 NC_001875.2 + 55739 0.72 0.597137
Target:  5'- aGCGUGgcCAugCGG-CCCUCuUCGGGGAu -3'
miRNA:   3'- -CGCGC--GUugGCCaGGGAGuAGUUCCU- -5'
6831 5' -55.8 NC_001875.2 + 90632 0.73 0.515489
Target:  5'- uGCGCGCcacaaauugcucaAGCUGGUCCC-CGUCGGuGGGc -3'
miRNA:   3'- -CGCGCG-------------UUGGCCAGGGaGUAGUU-CCU- -5'
6831 5' -55.8 NC_001875.2 + 42648 0.74 0.487309
Target:  5'- aCGCcCAGCCGGUCCg-CGUCGAGGc -3'
miRNA:   3'- cGCGcGUUGGCCAGGgaGUAGUUCCu -5'
6831 5' -55.8 NC_001875.2 + 41226 1.11 0.002025
Target:  5'- gGCGCGCAACCGGUCCCUCAUCAAGGAa -3'
miRNA:   3'- -CGCGCGUUGGCCAGGGAGUAGUUCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.