Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6831 | 5' | -55.8 | NC_001875.2 | + | 130118 | 0.66 | 0.898209 |
Target: 5'- gGCgGCGCGACCGGUgucgcgCCCgcagCAUUuguggccacagaaGAGGGc -3' miRNA: 3'- -CG-CGCGUUGGCCA------GGGa---GUAG-------------UUCCU- -5' |
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6831 | 5' | -55.8 | NC_001875.2 | + | 81304 | 0.66 | 0.892251 |
Target: 5'- cGCGCGCcGCCGGcggcgccuccUCCUCGUCAu--- -3' miRNA: 3'- -CGCGCGuUGGCCa---------GGGAGUAGUuccu -5' |
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6831 | 5' | -55.8 | NC_001875.2 | + | 37180 | 0.66 | 0.885412 |
Target: 5'- cCGCGC-GCUGG-CCCauuUCAuguUCGAGGAa -3' miRNA: 3'- cGCGCGuUGGCCaGGG---AGU---AGUUCCU- -5' |
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6831 | 5' | -55.8 | NC_001875.2 | + | 3465 | 0.66 | 0.885412 |
Target: 5'- -aGCuGCAACCGGUgCCUCuugugaacgguuGUCAAGu- -3' miRNA: 3'- cgCG-CGUUGGCCAgGGAG------------UAGUUCcu -5' |
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6831 | 5' | -55.8 | NC_001875.2 | + | 66357 | 0.66 | 0.878346 |
Target: 5'- gGCGCGCAuCCaGUCgg-CGUCGAGGu -3' miRNA: 3'- -CGCGCGUuGGcCAGggaGUAGUUCCu -5' |
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6831 | 5' | -55.8 | NC_001875.2 | + | 5519 | 0.67 | 0.871057 |
Target: 5'- cGCGCGCAguuuacGCCGG-CCgC-CGUUGAGGc -3' miRNA: 3'- -CGCGCGU------UGGCCaGG-GaGUAGUUCCu -5' |
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6831 | 5' | -55.8 | NC_001875.2 | + | 4938 | 0.67 | 0.855834 |
Target: 5'- --cCGCGGCCGuGUUCCUCAUUGuGGGg -3' miRNA: 3'- cgcGCGUUGGC-CAGGGAGUAGUuCCU- -5' |
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6831 | 5' | -55.8 | NC_001875.2 | + | 13529 | 0.69 | 0.749403 |
Target: 5'- aGCGCGCGGCCGGcCgCCUCGa------ -3' miRNA: 3'- -CGCGCGUUGGCCaG-GGAGUaguuccu -5' |
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6831 | 5' | -55.8 | NC_001875.2 | + | 48637 | 0.69 | 0.749403 |
Target: 5'- uGCuGCGCAGCCaGUCgCUgGUguGGGAg -3' miRNA: 3'- -CG-CGCGUUGGcCAGgGAgUAguUCCU- -5' |
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6831 | 5' | -55.8 | NC_001875.2 | + | 124413 | 0.69 | 0.729779 |
Target: 5'- gGCGCGCAGuuG--CCCUCGUCGuuGGGc -3' miRNA: 3'- -CGCGCGUUggCcaGGGAGUAGUu-CCU- -5' |
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6831 | 5' | -55.8 | NC_001875.2 | + | 120800 | 0.71 | 0.65786 |
Target: 5'- uGCGCGCGuggugaaACUGGUCgCC-CAUCAuGGGc -3' miRNA: 3'- -CGCGCGU-------UGGCCAG-GGaGUAGUuCCU- -5' |
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6831 | 5' | -55.8 | NC_001875.2 | + | 89938 | 0.72 | 0.60638 |
Target: 5'- uGCGCuCAACCGaGgcuccggcuacuuUCCCUCGUaCAGGGAg -3' miRNA: 3'- -CGCGcGUUGGC-C-------------AGGGAGUA-GUUCCU- -5' |
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6831 | 5' | -55.8 | NC_001875.2 | + | 55739 | 0.72 | 0.597137 |
Target: 5'- aGCGUGgcCAugCGG-CCCUCuUCGGGGAu -3' miRNA: 3'- -CGCGC--GUugGCCaGGGAGuAGUUCCU- -5' |
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6831 | 5' | -55.8 | NC_001875.2 | + | 90632 | 0.73 | 0.515489 |
Target: 5'- uGCGCGCcacaaauugcucaAGCUGGUCCC-CGUCGGuGGGc -3' miRNA: 3'- -CGCGCG-------------UUGGCCAGGGaGUAGUU-CCU- -5' |
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6831 | 5' | -55.8 | NC_001875.2 | + | 42648 | 0.74 | 0.487309 |
Target: 5'- aCGCcCAGCCGGUCCg-CGUCGAGGc -3' miRNA: 3'- cGCGcGUUGGCCAGGgaGUAGUUCCu -5' |
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6831 | 5' | -55.8 | NC_001875.2 | + | 41226 | 1.11 | 0.002025 |
Target: 5'- gGCGCGCAACCGGUCCCUCAUCAAGGAa -3' miRNA: 3'- -CGCGCGUUGGCCAGGGAGUAGUUCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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