miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6832 3' -52.5 NC_001875.2 + 1865 0.66 0.969785
Target:  5'- -gAAagGCGCGuGCUauuuuuaGCAGUGCGUCa -3'
miRNA:   3'- agUUagCGCGUuCGGa------CGUCAUGCAG- -5'
6832 3' -52.5 NC_001875.2 + 2265 0.66 0.969785
Target:  5'- --uGUCGCuGCGGGCCaUGUug-ACGUCg -3'
miRNA:   3'- aguUAGCG-CGUUCGG-ACGucaUGCAG- -5'
6832 3' -52.5 NC_001875.2 + 111836 0.66 0.969785
Target:  5'- aCGGcUGCGCGAGCCgGCcaGGUgucuggccacgcACGUCa -3'
miRNA:   3'- aGUUaGCGCGUUCGGaCG--UCA------------UGCAG- -5'
6832 3' -52.5 NC_001875.2 + 50140 0.66 0.969785
Target:  5'- cUCGGUgCGCGCGGGUgUGCug-AgGUCg -3'
miRNA:   3'- -AGUUA-GCGCGUUCGgACGucaUgCAG- -5'
6832 3' -52.5 NC_001875.2 + 53846 0.66 0.969477
Target:  5'- gUCAAuggucUCGCGCAcgcuggcaccgucGGCCUGUuggucGUGCGg- -3'
miRNA:   3'- -AGUU-----AGCGCGU-------------UCGGACGu----CAUGCag -5'
6832 3' -52.5 NC_001875.2 + 30859 0.66 0.9666
Target:  5'- gCAAaCGcCGC-GGCCUGCAGcGCGg- -3'
miRNA:   3'- aGUUaGC-GCGuUCGGACGUCaUGCag -5'
6832 3' -52.5 NC_001875.2 + 5939 0.66 0.9666
Target:  5'- ----cCGCGCAggugggcgcGGCCUcGCAGUACa-- -3'
miRNA:   3'- aguuaGCGCGU---------UCGGA-CGUCAUGcag -5'
6832 3' -52.5 NC_001875.2 + 74932 0.66 0.963185
Target:  5'- cUUAAagGCGaCAAGCCgcugcugcgGCGGUACGa- -3'
miRNA:   3'- -AGUUagCGC-GUUCGGa--------CGUCAUGCag -5'
6832 3' -52.5 NC_001875.2 + 54156 0.66 0.961023
Target:  5'- gCAGUCGCGCAaauacgcgcucggacAGCggcgCUGCGuugGCGUCc -3'
miRNA:   3'- aGUUAGCGCGU---------------UCG----GACGUca-UGCAG- -5'
6832 3' -52.5 NC_001875.2 + 30382 0.66 0.959534
Target:  5'- cUCGAaaaGCGCGuGCUauuuuuaGCGGUGCGUCa -3'
miRNA:   3'- -AGUUag-CGCGUuCGGa------CGUCAUGCAG- -5'
6832 3' -52.5 NC_001875.2 + 30646 0.66 0.959534
Target:  5'- cUCGAaaaGCGCGuGCUauuuuuaGCGGUGCGUCa -3'
miRNA:   3'- -AGUUag-CGCGUuCGGa------CGUCAUGCAG- -5'
6832 3' -52.5 NC_001875.2 + 96416 0.66 0.959534
Target:  5'- aCAGUCGCGCGcaaacucgcGCUUGUcg-GCGUCg -3'
miRNA:   3'- aGUUAGCGCGUu--------CGGACGucaUGCAG- -5'
6832 3' -52.5 NC_001875.2 + 91753 0.66 0.959534
Target:  5'- cCAGUgGCGCGucagcgccgcGGCCUcgucGUAGUGCGg- -3'
miRNA:   3'- aGUUAgCGCGU----------UCGGA----CGUCAUGCag -5'
6832 3' -52.5 NC_001875.2 + 30514 0.66 0.959534
Target:  5'- cUCGAaaaGCGCGuGCUauuuuuaGCGGUGCGUCa -3'
miRNA:   3'- -AGUUag-CGCGUuCGGa------CGUCAUGCAG- -5'
6832 3' -52.5 NC_001875.2 + 30448 0.66 0.959534
Target:  5'- cUCGAaaaGCGCGuGCUauuuuuaGCGGUGCGUCa -3'
miRNA:   3'- -AGUUag-CGCGUuCGGa------CGUCAUGCAG- -5'
6832 3' -52.5 NC_001875.2 + 58413 0.66 0.959534
Target:  5'- uUUGAUCgGCGCAauugaAGCgCUGCAaaACGUCg -3'
miRNA:   3'- -AGUUAG-CGCGU-----UCG-GACGUcaUGCAG- -5'
6832 3' -52.5 NC_001875.2 + 90284 0.66 0.959534
Target:  5'- gUCAugaacgaGCGCAAGCgcaagUUGCAG-GCGUCg -3'
miRNA:   3'- -AGUuag----CGCGUUCG-----GACGUCaUGCAG- -5'
6832 3' -52.5 NC_001875.2 + 72573 0.66 0.959534
Target:  5'- -----gGCGCGGGCgCUGCgGGUGCGg- -3'
miRNA:   3'- aguuagCGCGUUCG-GACG-UCAUGCag -5'
6832 3' -52.5 NC_001875.2 + 71544 0.66 0.959534
Target:  5'- gCGA-CGCGUc-GCCUGCAGUGuCGcCa -3'
miRNA:   3'- aGUUaGCGCGuuCGGACGUCAU-GCaG- -5'
6832 3' -52.5 NC_001875.2 + 79623 0.66 0.955641
Target:  5'- gCAGUCGCGCGuccAGUUUGCAcgGCG-Cg -3'
miRNA:   3'- aGUUAGCGCGU---UCGGACGUcaUGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.