miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6832 5' -52.8 NC_001875.2 + 46358 0.66 0.958344
Target:  5'- gCAGAUggaaauuuggccgcaGCUGCUGCGCAUgugcagcgacacggUGuCCGAcGUGg -3'
miRNA:   3'- -GUCUG---------------CGACGACGUGUA--------------AC-GGUU-CAC- -5'
6832 5' -52.8 NC_001875.2 + 124749 0.66 0.957955
Target:  5'- gCAGcgcGCGCUGCaugucUGCGCAcagGCC-GGUGg -3'
miRNA:   3'- -GUC---UGCGACG-----ACGUGUaa-CGGuUCAC- -5'
6832 5' -52.8 NC_001875.2 + 18704 0.66 0.957955
Target:  5'- -cGGCGCUGgUGCACuccaugaacaggAUUGCCAu--- -3'
miRNA:   3'- guCUGCGACgACGUG------------UAACGGUucac -5'
6832 5' -52.8 NC_001875.2 + 63733 0.66 0.949659
Target:  5'- uGGACGC-GCUGCACAacggGCCu---- -3'
miRNA:   3'- gUCUGCGaCGACGUGUaa--CGGuucac -5'
6832 5' -52.8 NC_001875.2 + 108979 0.66 0.949659
Target:  5'- --uGCGCUGCaGCACggUGuCCAGGcUGg -3'
miRNA:   3'- gucUGCGACGaCGUGuaAC-GGUUC-AC- -5'
6832 5' -52.8 NC_001875.2 + 119555 0.66 0.949659
Target:  5'- -cGGCGUgccgGCUGCACAcggugGCCugcAAGUGc -3'
miRNA:   3'- guCUGCGa---CGACGUGUaa---CGG---UUCAC- -5'
6832 5' -52.8 NC_001875.2 + 121160 0.66 0.945129
Target:  5'- cCAGcCGUUGCggcaGCGCcugcGCCAAGUGc -3'
miRNA:   3'- -GUCuGCGACGa---CGUGuaa-CGGUUCAC- -5'
6832 5' -52.8 NC_001875.2 + 64400 0.66 0.94034
Target:  5'- uCAGACGCUGUUGCugG--GCUccGUc -3'
miRNA:   3'- -GUCUGCGACGACGugUaaCGGuuCAc -5'
6832 5' -52.8 NC_001875.2 + 44454 0.66 0.94034
Target:  5'- aAGGCGCcGUcgGCGCAgugcGCCAAGUc -3'
miRNA:   3'- gUCUGCGaCGa-CGUGUaa--CGGUUCAc -5'
6832 5' -52.8 NC_001875.2 + 98345 0.66 0.94034
Target:  5'- -uGGCGCUGCgGCACGUcGacuaCAAGUu -3'
miRNA:   3'- guCUGCGACGaCGUGUAaCg---GUUCAc -5'
6832 5' -52.8 NC_001875.2 + 26844 0.67 0.935289
Target:  5'- --cGCGCUGCUGCAUcUUGauaaaCAAGUc -3'
miRNA:   3'- gucUGCGACGACGUGuAACg----GUUCAc -5'
6832 5' -52.8 NC_001875.2 + 118508 0.67 0.924397
Target:  5'- -uGAC-CUGCUGCGguUUGCgcugCAAGUGg -3'
miRNA:   3'- guCUGcGACGACGUguAACG----GUUCAC- -5'
6832 5' -52.8 NC_001875.2 + 10997 0.67 0.924397
Target:  5'- --aGCGCUGCagGCGCGcgUGCCcauGGUGu -3'
miRNA:   3'- gucUGCGACGa-CGUGUa-ACGGu--UCAC- -5'
6832 5' -52.8 NC_001875.2 + 47194 0.67 0.924397
Target:  5'- aAGGCGCUGCUggaGCACAc-GCgCGGGUu -3'
miRNA:   3'- gUCUGCGACGA---CGUGUaaCG-GUUCAc -5'
6832 5' -52.8 NC_001875.2 + 38344 0.67 0.924397
Target:  5'- -uGugGUUGCUGUgucGCuugcGCCAAGUGu -3'
miRNA:   3'- guCugCGACGACG---UGuaa-CGGUUCAC- -5'
6832 5' -52.8 NC_001875.2 + 86376 0.67 0.924397
Target:  5'- cUAGACGCgcgGCUGCGgGc-GCCGAGc- -3'
miRNA:   3'- -GUCUGCGa--CGACGUgUaaCGGUUCac -5'
6832 5' -52.8 NC_001875.2 + 21253 0.67 0.910565
Target:  5'- aCGGGCGC-GUUGCGCAUcacguacaucUGCCGuugcauuugccgauAGUGg -3'
miRNA:   3'- -GUCUGCGaCGACGUGUA----------ACGGU--------------UCAC- -5'
6832 5' -52.8 NC_001875.2 + 81638 0.68 0.899452
Target:  5'- uCAGGCGCUGCUGCGCGauuUCGAc-- -3'
miRNA:   3'- -GUCUGCGACGACGUGUaacGGUUcac -5'
6832 5' -52.8 NC_001875.2 + 87916 0.68 0.899452
Target:  5'- uGGACGCUGgUGCGCGacuCCAAGc- -3'
miRNA:   3'- gUCUGCGACgACGUGUaacGGUUCac -5'
6832 5' -52.8 NC_001875.2 + 17359 0.68 0.892569
Target:  5'- uCAGAgUGCUGCcGCACAUcucuaccGCCAAcGUGg -3'
miRNA:   3'- -GUCU-GCGACGaCGUGUAa------CGGUU-CAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.