miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6833 3' -60.2 NC_001875.2 + 125973 0.66 0.705908
Target:  5'- cAUCGGcgaGGGCAaaCGCGUgCugGUGCa -3'
miRNA:   3'- -UAGCCa--CCUGUacGCGCGgGugCGCG- -5'
6833 3' -60.2 NC_001875.2 + 47956 0.66 0.705908
Target:  5'- --aGGcagGGGCAcucCGCGCCCcCGUGCg -3'
miRNA:   3'- uagCCa--CCUGUac-GCGCGGGuGCGCG- -5'
6833 3' -60.2 NC_001875.2 + 62570 0.66 0.702946
Target:  5'- cGUCGGUGuGCGUGUGCauuaaccggcccguGCCguCGgGCa -3'
miRNA:   3'- -UAGCCACcUGUACGCG--------------CGGguGCgCG- -5'
6833 3' -60.2 NC_001875.2 + 20084 0.66 0.697006
Target:  5'- aGUCGGUcGGcGCAcgugaUGgGCGCCCcaauucgcagguguuCGCGCa -3'
miRNA:   3'- -UAGCCA-CC-UGU-----ACgCGCGGGu--------------GCGCG- -5'
6833 3' -60.2 NC_001875.2 + 17087 0.66 0.696014
Target:  5'- gGUCaGGccGGGCAagccGCGCGCCaCugGCGg -3'
miRNA:   3'- -UAG-CCa-CCUGUa---CGCGCGG-GugCGCg -5'
6833 3' -60.2 NC_001875.2 + 18445 0.66 0.696014
Target:  5'- -gCGGUccGCGUgGCGCGCgaaUCGCGCGCc -3'
miRNA:   3'- uaGCCAccUGUA-CGCGCG---GGUGCGCG- -5'
6833 3' -60.2 NC_001875.2 + 113990 0.66 0.696014
Target:  5'- cUCGGccGAC-UGCaccucguuuucgGCGCCCuCGCGCa -3'
miRNA:   3'- uAGCCacCUGuACG------------CGCGGGuGCGCG- -5'
6833 3' -60.2 NC_001875.2 + 39306 0.66 0.696014
Target:  5'- aGUUGGUGuGCAgagaaaaCGCGCCgGgCGCGCa -3'
miRNA:   3'- -UAGCCACcUGUac-----GCGCGGgU-GCGCG- -5'
6833 3' -60.2 NC_001875.2 + 125627 0.66 0.695021
Target:  5'- uGUCGccgacGGACGcaauUGCGCGCUUugaaacgGCGCGCg -3'
miRNA:   3'- -UAGCca---CCUGU----ACGCGCGGG-------UGCGCG- -5'
6833 3' -60.2 NC_001875.2 + 2280 0.66 0.686068
Target:  5'- uGUUGacGUcGugAUGCGCGCgcgccguggCCGCGCGCa -3'
miRNA:   3'- -UAGC--CAcCugUACGCGCG---------GGUGCGCG- -5'
6833 3' -60.2 NC_001875.2 + 74368 0.66 0.686068
Target:  5'- ------cGGCGUGCGCGgCCGCgGCGCg -3'
miRNA:   3'- uagccacCUGUACGCGCgGGUG-CGCG- -5'
6833 3' -60.2 NC_001875.2 + 29333 0.66 0.686068
Target:  5'- -----cGGACAcUGCgGCGCCCAC-CGCu -3'
miRNA:   3'- uagccaCCUGU-ACG-CGCGGGUGcGCG- -5'
6833 3' -60.2 NC_001875.2 + 83005 0.66 0.686068
Target:  5'- -cCGGcGGGCuugaaGCgGCGCCguaGCGCGCg -3'
miRNA:   3'- uaGCCaCCUGua---CG-CGCGGg--UGCGCG- -5'
6833 3' -60.2 NC_001875.2 + 52191 0.66 0.676078
Target:  5'- -aCGGUcaacuugcuGGGCGacUGCGCGCCgugcaaacuggACGCGCg -3'
miRNA:   3'- uaGCCA---------CCUGU--ACGCGCGGg----------UGCGCG- -5'
6833 3' -60.2 NC_001875.2 + 29790 0.66 0.676078
Target:  5'- --gGGUGGACggGCGUGUcaggCUACGCcgGCg -3'
miRNA:   3'- uagCCACCUGuaCGCGCG----GGUGCG--CG- -5'
6833 3' -60.2 NC_001875.2 + 5494 0.66 0.676078
Target:  5'- cUCGGUGcacagcacGACcgGCGCa--CGCGCGCa -3'
miRNA:   3'- uAGCCAC--------CUGuaCGCGcggGUGCGCG- -5'
6833 3' -60.2 NC_001875.2 + 78499 0.66 0.676078
Target:  5'- uGUCGGUGGACgacggagacauuGUGUuccgcaGCGaCUACGUGCc -3'
miRNA:   3'- -UAGCCACCUG------------UACG------CGCgGGUGCGCG- -5'
6833 3' -60.2 NC_001875.2 + 128956 0.66 0.676078
Target:  5'- cGUCGuca-ACAUGCGU-CCCACGCGCc -3'
miRNA:   3'- -UAGCcaccUGUACGCGcGGGUGCGCG- -5'
6833 3' -60.2 NC_001875.2 + 46893 0.66 0.676078
Target:  5'- -aCGGUGGAUGUGauCGCaguucGUUCGCGCGUu -3'
miRNA:   3'- uaGCCACCUGUAC--GCG-----CGGGUGCGCG- -5'
6833 3' -60.2 NC_001875.2 + 9599 0.66 0.676078
Target:  5'- -gCGGUGGGC--GCGUGCaaCgACGCGUu -3'
miRNA:   3'- uaGCCACCUGuaCGCGCG--GgUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.