miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6833 5' -54.8 NC_001875.2 + 12096 0.66 0.902612
Target:  5'- -gGCGGCGAGCUuugGCGGUacaCCAgCAGg- -3'
miRNA:   3'- gaUGUCGCUCGA---CGCCG---GGUaGUUaa -5'
6833 5' -54.8 NC_001875.2 + 32935 0.66 0.902612
Target:  5'- -cGCcGCGAGCUaCGGCgCCAaUCGAUUc -3'
miRNA:   3'- gaUGuCGCUCGAcGCCG-GGU-AGUUAA- -5'
6833 5' -54.8 NC_001875.2 + 21832 0.66 0.902612
Target:  5'- ---uGGuCGAGCUGCGcGCgCGUCAAc- -3'
miRNA:   3'- gaugUC-GCUCGACGC-CGgGUAGUUaa -5'
6833 5' -54.8 NC_001875.2 + 73628 0.66 0.888988
Target:  5'- gCUGCGGCG-GCUGCGGCg-------- -3'
miRNA:   3'- -GAUGUCGCuCGACGCCGgguaguuaa -5'
6833 5' -54.8 NC_001875.2 + 13486 0.66 0.888988
Target:  5'- gUACAGCGGGCcGCcGCUguUCAAa- -3'
miRNA:   3'- gAUGUCGCUCGaCGcCGGguAGUUaa -5'
6833 5' -54.8 NC_001875.2 + 49667 0.66 0.881806
Target:  5'- -cGCGGCG-GUUGCGcacguaccGCCCGUCGGc- -3'
miRNA:   3'- gaUGUCGCuCGACGC--------CGGGUAGUUaa -5'
6833 5' -54.8 NC_001875.2 + 120673 0.66 0.874385
Target:  5'- -gACGGCGcGCUGCuGuGCgCCAUCGAc- -3'
miRNA:   3'- gaUGUCGCuCGACG-C-CG-GGUAGUUaa -5'
6833 5' -54.8 NC_001875.2 + 68040 0.66 0.87363
Target:  5'- --uCAGCGAGCUGUccaauuauuugguGGCCCAa----- -3'
miRNA:   3'- gauGUCGCUCGACG-------------CCGGGUaguuaa -5'
6833 5' -54.8 NC_001875.2 + 23683 0.67 0.858847
Target:  5'- gUGCA-CGAccagGCUGCGGCCCAauauacUCAAc- -3'
miRNA:   3'- gAUGUcGCU----CGACGCCGGGU------AGUUaa -5'
6833 5' -54.8 NC_001875.2 + 13258 0.67 0.858847
Target:  5'- -cACGGCGGcGCcGCGGUCCA-CAAUc -3'
miRNA:   3'- gaUGUCGCU-CGaCGCCGGGUaGUUAa -5'
6833 5' -54.8 NC_001875.2 + 61465 0.67 0.858847
Target:  5'- -gACAGCGGcgcgcaauuGCUGCaGCgCGUCGAUUa -3'
miRNA:   3'- gaUGUCGCU---------CGACGcCGgGUAGUUAA- -5'
6833 5' -54.8 NC_001875.2 + 49343 0.67 0.858847
Target:  5'- cCUGCAGCGugGGCgGCGGgCCGUgGu-- -3'
miRNA:   3'- -GAUGUCGC--UCGaCGCCgGGUAgUuaa -5'
6833 5' -54.8 NC_001875.2 + 50848 0.67 0.842422
Target:  5'- --cCGGCGA-UUGgGGCCCGUCGAc- -3'
miRNA:   3'- gauGUCGCUcGACgCCGGGUAGUUaa -5'
6833 5' -54.8 NC_001875.2 + 19919 0.67 0.833896
Target:  5'- gUACGGC-AGCUGCaccGGCCCGUaCAc-- -3'
miRNA:   3'- gAUGUCGcUCGACG---CCGGGUA-GUuaa -5'
6833 5' -54.8 NC_001875.2 + 85478 0.67 0.833033
Target:  5'- -cGCAGC-AGCUGCGGCCaaauuucCAUCu--- -3'
miRNA:   3'- gaUGUCGcUCGACGCCGG-------GUAGuuaa -5'
6833 5' -54.8 NC_001875.2 + 40782 0.67 0.825172
Target:  5'- -aACGGCGuGCUGCGcguGCCCAgCAc-- -3'
miRNA:   3'- gaUGUCGCuCGACGC---CGGGUaGUuaa -5'
6833 5' -54.8 NC_001875.2 + 48361 0.68 0.816258
Target:  5'- uUACAGCGcGCUaaucGCGcGCCCGUCc--- -3'
miRNA:   3'- gAUGUCGCuCGA----CGC-CGGGUAGuuaa -5'
6833 5' -54.8 NC_001875.2 + 41860 0.68 0.816258
Target:  5'- -gGCGGCGAGCUGCaacaacuGCUCGUCc--- -3'
miRNA:   3'- gaUGUCGCUCGACGc------CGGGUAGuuaa -5'
6833 5' -54.8 NC_001875.2 + 84171 0.68 0.816258
Target:  5'- -cGCGGCGcGCcGCGGCCgCGUCcGUg -3'
miRNA:   3'- gaUGUCGCuCGaCGCCGG-GUAGuUAa -5'
6833 5' -54.8 NC_001875.2 + 62585 0.68 0.807163
Target:  5'- -cACGGCucGAGCcGCGGCCCAgcgCGc-- -3'
miRNA:   3'- gaUGUCG--CUCGaCGCCGGGUa--GUuaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.