miRNA display CGI


Results 1 - 20 of 180 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6834 3' -53.2 NC_001875.2 + 94613 0.66 0.961754
Target:  5'- cGugUAgcGCGGCAGCGGCUugcugcaccgcugCGCCa -3'
miRNA:   3'- -CugAUguUGCCGUUGUCGGuca----------GCGG- -5'
6834 3' -53.2 NC_001875.2 + 40179 0.66 0.961395
Target:  5'- ---cGCAugGGCGugccguacgcguACGGCCAGcUGCUg -3'
miRNA:   3'- cugaUGUugCCGU------------UGUCGGUCaGCGG- -5'
6834 3' -53.2 NC_001875.2 + 90927 0.66 0.961395
Target:  5'- -cCUGCggUGGUGAUGGCCAcgcuGUCGUUu -3'
miRNA:   3'- cuGAUGuuGCCGUUGUCGGU----CAGCGG- -5'
6834 3' -53.2 NC_001875.2 + 32784 0.66 0.961395
Target:  5'- ---cGC-GCGGCGugGGCgGG-CGCCg -3'
miRNA:   3'- cugaUGuUGCCGUugUCGgUCaGCGG- -5'
6834 3' -53.2 NC_001875.2 + 89972 0.66 0.961395
Target:  5'- gGugUugGACGaGCAguuguuGCAGCUcGcCGCCg -3'
miRNA:   3'- -CugAugUUGC-CGU------UGUCGGuCaGCGG- -5'
6834 3' -53.2 NC_001875.2 + 115443 0.66 0.961395
Target:  5'- cGCUGgGACa-CAGCAGCUuGUCGCUg -3'
miRNA:   3'- cUGAUgUUGccGUUGUCGGuCAGCGG- -5'
6834 3' -53.2 NC_001875.2 + 104686 0.66 0.961395
Target:  5'- aGCUacGCAGCGGCGACcaAGCUGGacgaGCUa -3'
miRNA:   3'- cUGA--UGUUGCCGUUG--UCGGUCag--CGG- -5'
6834 3' -53.2 NC_001875.2 + 10617 0.66 0.961395
Target:  5'- uGugUACGACaaCAAcCGGCCGGUgcCGCCc -3'
miRNA:   3'- -CugAUGUUGccGUU-GUCGGUCA--GCGG- -5'
6834 3' -53.2 NC_001875.2 + 59391 0.66 0.960302
Target:  5'- -uUUGCcGCGGuCAACaugcaauugaacgaAGCCAGgcgCGCCg -3'
miRNA:   3'- cuGAUGuUGCC-GUUG--------------UCGGUCa--GCGG- -5'
6834 3' -53.2 NC_001875.2 + 91725 0.66 0.957669
Target:  5'- uGACgGCcguCGGCAAguacagcgcCAGCCAGUgGCg -3'
miRNA:   3'- -CUGaUGuu-GCCGUU---------GUCGGUCAgCGg -5'
6834 3' -53.2 NC_001875.2 + 90732 0.66 0.957669
Target:  5'- cGAC-ACGACGuGCGACGGU--GUgGCCa -3'
miRNA:   3'- -CUGaUGUUGC-CGUUGUCGguCAgCGG- -5'
6834 3' -53.2 NC_001875.2 + 118986 0.66 0.957669
Target:  5'- cGACcaACcACGGCugcguGCuAGCCGG-CGCCg -3'
miRNA:   3'- -CUGa-UGuUGCCGu----UG-UCGGUCaGCGG- -5'
6834 3' -53.2 NC_001875.2 + 56352 0.66 0.957669
Target:  5'- -cCUGCGACGcaggcGCGACAuGCCcGUUGUCa -3'
miRNA:   3'- cuGAUGUUGC-----CGUUGU-CGGuCAGCGG- -5'
6834 3' -53.2 NC_001875.2 + 65773 0.66 0.957669
Target:  5'- ---cGCGGCgGGCGGCGGCgC-GUCGUCg -3'
miRNA:   3'- cugaUGUUG-CCGUUGUCG-GuCAGCGG- -5'
6834 3' -53.2 NC_001875.2 + 92546 0.66 0.957669
Target:  5'- gGugUGCAGCGcGCAcuuggugucgGCGGgCAGaaGCCg -3'
miRNA:   3'- -CugAUGUUGC-CGU----------UGUCgGUCagCGG- -5'
6834 3' -53.2 NC_001875.2 + 111776 0.66 0.957283
Target:  5'- cGACUggugucgcuggugACGGCGGUGcacGCGGCCGacggCGCCu -3'
miRNA:   3'- -CUGA-------------UGUUGCCGU---UGUCGGUca--GCGG- -5'
6834 3' -53.2 NC_001875.2 + 49515 0.66 0.953704
Target:  5'- aACU-CGGCGGaCcGCGaCCAGUCGCUg -3'
miRNA:   3'- cUGAuGUUGCC-GuUGUcGGUCAGCGG- -5'
6834 3' -53.2 NC_001875.2 + 104844 0.66 0.953704
Target:  5'- ---gACGGCGGCAACAaCCucaacGUgGCCg -3'
miRNA:   3'- cugaUGUUGCCGUUGUcGGu----CAgCGG- -5'
6834 3' -53.2 NC_001875.2 + 31702 0.66 0.953704
Target:  5'- cGCgACAGCGGCAgacACAaaCAG-CGCCa -3'
miRNA:   3'- cUGaUGUUGCCGU---UGUcgGUCaGCGG- -5'
6834 3' -53.2 NC_001875.2 + 98741 0.66 0.953704
Target:  5'- uGCUACuuugcguuaGACGGCAAguGCCcGacgUGCCg -3'
miRNA:   3'- cUGAUG---------UUGCCGUUguCGGuCa--GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.