miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6834 5' -58.6 NC_001875.2 + 32825 0.66 0.817715
Target:  5'- -cGGCGCCGCUugCGagCGUGgcaccaaaacCUGGu -3'
miRNA:   3'- gcCCGCGGCGGugGUa-GCACau--------GACC- -5'
6834 5' -58.6 NC_001875.2 + 33453 0.66 0.817715
Target:  5'- --cGCGuCCGCCACCucGUCGUGgucgGGg -3'
miRNA:   3'- gccCGC-GGCGGUGG--UAGCACaugaCC- -5'
6834 5' -58.6 NC_001875.2 + 85558 0.66 0.809166
Target:  5'- aCGGGCGCC-UCAUCAcaaCGg--GCUGGg -3'
miRNA:   3'- -GCCCGCGGcGGUGGUa--GCacaUGACC- -5'
6834 5' -58.6 NC_001875.2 + 17334 0.66 0.809166
Target:  5'- gCGGuuGCGCCGCCGCgCGaccgCGUcagaGUGCUGc -3'
miRNA:   3'- -GCC--CGCGGCGGUG-GUa---GCA----CAUGACc -5'
6834 5' -58.6 NC_001875.2 + 62829 0.66 0.809166
Target:  5'- gGGGCaGCgCGCCACCA-CGUGcuUGCc-- -3'
miRNA:   3'- gCCCG-CG-GCGGUGGUaGCAC--AUGacc -5'
6834 5' -58.6 NC_001875.2 + 127271 0.66 0.809166
Target:  5'- uCGGGCauGCgGCUGCUcgCGU-UGCUGGc -3'
miRNA:   3'- -GCCCG--CGgCGGUGGuaGCAcAUGACC- -5'
6834 5' -58.6 NC_001875.2 + 62487 0.66 0.808302
Target:  5'- gCGGGCGCaCGCCGCUgacugcgcguuucGUCGcGUGuuugacgucgacUUGGa -3'
miRNA:   3'- -GCCCGCG-GCGGUGG-------------UAGCaCAU------------GACC- -5'
6834 5' -58.6 NC_001875.2 + 130844 0.66 0.800462
Target:  5'- aCGGGC-CCGCaGCaauggCGuUGUGCUGGu -3'
miRNA:   3'- -GCCCGcGGCGgUGgua--GC-ACAUGACC- -5'
6834 5' -58.6 NC_001875.2 + 131516 0.66 0.800462
Target:  5'- cCGGGgGCCGgCAuCCGUuugagcggagcgCGgacgagGUGCUGGa -3'
miRNA:   3'- -GCCCgCGGCgGU-GGUA------------GCa-----CAUGACC- -5'
6834 5' -58.6 NC_001875.2 + 41607 0.66 0.800462
Target:  5'- gCGGGCGCgggCGCgGgCAUCG-GUAUcGGg -3'
miRNA:   3'- -GCCCGCG---GCGgUgGUAGCaCAUGaCC- -5'
6834 5' -58.6 NC_001875.2 + 100604 0.66 0.800462
Target:  5'- cCGGGCGCCgGCCGCgGccgcuguuugccUCGUGga-UGa -3'
miRNA:   3'- -GCCCGCGG-CGGUGgU------------AGCACaugACc -5'
6834 5' -58.6 NC_001875.2 + 74151 0.66 0.800462
Target:  5'- aGGGCgcggcgcccGCCGCCGCCAgcuuggacgCGUuuugcGaGCUGGu -3'
miRNA:   3'- gCCCG---------CGGCGGUGGUa--------GCA-----CaUGACC- -5'
6834 5' -58.6 NC_001875.2 + 44007 0.66 0.800462
Target:  5'- aCGGGCGCCGUgcCCAgc--GUGCUGu -3'
miRNA:   3'- -GCCCGCGGCGguGGUagcaCAUGACc -5'
6834 5' -58.6 NC_001875.2 + 99992 0.66 0.800462
Target:  5'- gCGGaGCGCUGUUAgCG-CG-GUGCUGGu -3'
miRNA:   3'- -GCC-CGCGGCGGUgGUaGCaCAUGACC- -5'
6834 5' -58.6 NC_001875.2 + 22581 0.66 0.795169
Target:  5'- cCGGGCGCgGCgCguugGCCGgccggcuguacgguuUCGUGUcuCUGGg -3'
miRNA:   3'- -GCCCGCGgCG-G----UGGU---------------AGCACAu-GACC- -5'
6834 5' -58.6 NC_001875.2 + 14418 0.66 0.791612
Target:  5'- uGGGCGCCaCCGgCAUgGgcggggGUACgGGa -3'
miRNA:   3'- gCCCGCGGcGGUgGUAgCa-----CAUGaCC- -5'
6834 5' -58.6 NC_001875.2 + 20812 0.66 0.790719
Target:  5'- gCGGGCGUCGUCGCag-CGcuUGUcgaccaaACUGGu -3'
miRNA:   3'- -GCCCGCGGCGGUGguaGC--ACA-------UGACC- -5'
6834 5' -58.6 NC_001875.2 + 83817 0.66 0.782623
Target:  5'- uGGGCggcggccacgugGCCGCCACCA-CGau--CUGGu -3'
miRNA:   3'- gCCCG------------CGGCGGUGGUaGCacauGACC- -5'
6834 5' -58.6 NC_001875.2 + 102515 0.66 0.773504
Target:  5'- uGGGCGCCGCaguguCCGUU-UGUGCg-- -3'
miRNA:   3'- gCCCGCGGCGgu---GGUAGcACAUGacc -5'
6834 5' -58.6 NC_001875.2 + 95430 0.66 0.773504
Target:  5'- cCGcGGCGCCG--GCCAgCGUGcgcgGCUGGc -3'
miRNA:   3'- -GC-CCGCGGCggUGGUaGCACa---UGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.