miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6835 5' -56 NC_001875.2 + 34619 0.66 0.900988
Target:  5'- gGAGCgGCCCGaggacaagGUGUgCAUCAUGg -3'
miRNA:   3'- gCUCG-CGGGCaaaa----CGCGgGUAGUGC- -5'
6835 5' -56 NC_001875.2 + 30906 0.66 0.900988
Target:  5'- --cGgGCCCGUUUUGCGCgUuUUGCa -3'
miRNA:   3'- gcuCgCGGGCAAAACGCGgGuAGUGc -5'
6835 5' -56 NC_001875.2 + 8497 0.66 0.894466
Target:  5'- cCGGGCGCcguCCGUguggGCGCCgCG-CACu -3'
miRNA:   3'- -GCUCGCG---GGCAaaa-CGCGG-GUaGUGc -5'
6835 5' -56 NC_001875.2 + 17324 0.66 0.894466
Target:  5'- aGAGCuGCUgGcggUUGCGCCgCcgCGCGa -3'
miRNA:   3'- gCUCG-CGGgCaa-AACGCGG-GuaGUGC- -5'
6835 5' -56 NC_001875.2 + 499 0.66 0.894466
Target:  5'- uGuGCGCCUGUUUuugGCGCuCCAUgGa- -3'
miRNA:   3'- gCuCGCGGGCAAAa--CGCG-GGUAgUgc -5'
6835 5' -56 NC_001875.2 + 72245 0.66 0.887713
Target:  5'- -aAGCGCCCGUgcucGCGCaCGUCGg- -3'
miRNA:   3'- gcUCGCGGGCAaaa-CGCGgGUAGUgc -5'
6835 5' -56 NC_001875.2 + 72707 0.66 0.887713
Target:  5'- gCGGuGCGCgCCGUUaaUUGCGCUUG-CGCGu -3'
miRNA:   3'- -GCU-CGCG-GGCAA--AACGCGGGUaGUGC- -5'
6835 5' -56 NC_001875.2 + 46284 0.66 0.880732
Target:  5'- ----aGCCCGUUgugaugagGCGCCCGUCuaGCa -3'
miRNA:   3'- gcucgCGGGCAAaa------CGCGGGUAG--UGc -5'
6835 5' -56 NC_001875.2 + 85056 0.66 0.880732
Target:  5'- gCGGGCGgCaCGUaaaauCGUCCAUCGCGg -3'
miRNA:   3'- -GCUCGCgG-GCAaaac-GCGGGUAGUGC- -5'
6835 5' -56 NC_001875.2 + 129541 0.66 0.880732
Target:  5'- cCGAGCugcgcgcgGCCaCGgcgcGCGCgCAUCACGa -3'
miRNA:   3'- -GCUCG--------CGG-GCaaaaCGCGgGUAGUGC- -5'
6835 5' -56 NC_001875.2 + 12380 0.66 0.880732
Target:  5'- aGGGUGCCaCGg--UGcCGCUCGUCGuCGg -3'
miRNA:   3'- gCUCGCGG-GCaaaAC-GCGGGUAGU-GC- -5'
6835 5' -56 NC_001875.2 + 51554 0.66 0.880732
Target:  5'- -cGGCGCUCGUcaagUGCgaGCCguUCACGa -3'
miRNA:   3'- gcUCGCGGGCAaa--ACG--CGGguAGUGC- -5'
6835 5' -56 NC_001875.2 + 120800 0.66 0.880732
Target:  5'- --uGCGCgCGUggUGaaacugguCGCCCAUCAUGg -3'
miRNA:   3'- gcuCGCGgGCAaaAC--------GCGGGUAGUGC- -5'
6835 5' -56 NC_001875.2 + 54582 0.66 0.873528
Target:  5'- cCGcuuCGCCCGgcggcGCGCCCAcggCGCGg -3'
miRNA:   3'- -GCuc-GCGGGCaaaa-CGCGGGUa--GUGC- -5'
6835 5' -56 NC_001875.2 + 10344 0.66 0.873528
Target:  5'- --cGCGCCCGUgauucaaaUUGCGCCgGgcUACGg -3'
miRNA:   3'- gcuCGCGGGCAa-------AACGCGGgUa-GUGC- -5'
6835 5' -56 NC_001875.2 + 84844 0.66 0.872795
Target:  5'- -cAGCaGCUccuccaaCGUggUGCGCUCAUCGCGg -3'
miRNA:   3'- gcUCG-CGG-------GCAaaACGCGGGUAGUGC- -5'
6835 5' -56 NC_001875.2 + 16935 0.66 0.866105
Target:  5'- uGAGCGCaUCGgcgcgUUGCGCCaCGUgACc -3'
miRNA:   3'- gCUCGCG-GGCaa---AACGCGG-GUAgUGc -5'
6835 5' -56 NC_001875.2 + 112653 0.66 0.866105
Target:  5'- --uGCGUCCGUgcaaucgcgGUGCCCG-CGCGg -3'
miRNA:   3'- gcuCGCGGGCAaaa------CGCGGGUaGUGC- -5'
6835 5' -56 NC_001875.2 + 65999 0.66 0.866105
Target:  5'- gGAcGUGCCCuauuaucgGUUggGCGCCCAcgagCGCGu -3'
miRNA:   3'- gCU-CGCGGG--------CAAaaCGCGGGUa---GUGC- -5'
6835 5' -56 NC_001875.2 + 44779 0.67 0.860782
Target:  5'- aCGAGCGCCgcugcuugcuaaaCGUUUuggacacgcaguagaUgagGCGCCCGuUCACGa -3'
miRNA:   3'- -GCUCGCGG-------------GCAAA---------------A---CGCGGGU-AGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.