miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6836 3' -53.9 NC_001875.2 + 1 0.66 0.942065
Target:  5'- -cGUGGGCGCGgcgacaGgGG-GguGCACa -3'
miRNA:   3'- guUACCUGCGCaua---CgCCaCguCGUG- -5'
6836 3' -53.9 NC_001875.2 + 88719 0.66 0.942065
Target:  5'- gCAGUGGAUGCGcg-GCGGcuccaaccUGCcGCAa -3'
miRNA:   3'- -GUUACCUGCGCauaCGCC--------ACGuCGUg -5'
6836 3' -53.9 NC_001875.2 + 17765 0.66 0.937184
Target:  5'- -uGUGGACaCGgcgGCGuUGCAGUACa -3'
miRNA:   3'- guUACCUGcGCauaCGCcACGUCGUG- -5'
6836 3' -53.9 NC_001875.2 + 100589 0.66 0.937184
Target:  5'- ----cGACGCGUAcGCGG-GCcgGGCGCc -3'
miRNA:   3'- guuacCUGCGCAUaCGCCaCG--UCGUG- -5'
6836 3' -53.9 NC_001875.2 + 124192 0.66 0.936682
Target:  5'- -cGUGGauguagaGCGCGUcgGCGuGUGU-GCGCa -3'
miRNA:   3'- guUACC-------UGCGCAuaCGC-CACGuCGUG- -5'
6836 3' -53.9 NC_001875.2 + 78176 0.66 0.932049
Target:  5'- --uUGGACGCGUAcaaGCGGaacGCuGCGg -3'
miRNA:   3'- guuACCUGCGCAUa--CGCCa--CGuCGUg -5'
6836 3' -53.9 NC_001875.2 + 79531 0.66 0.932049
Target:  5'- --uUGG-CGUGUAUGCGccaCAGCGCa -3'
miRNA:   3'- guuACCuGCGCAUACGCcacGUCGUG- -5'
6836 3' -53.9 NC_001875.2 + 93473 0.66 0.928845
Target:  5'- --uUGGACuCGUAcGUGGUGCAaagccucgaugccauGCGCg -3'
miRNA:   3'- guuACCUGcGCAUaCGCCACGU---------------CGUG- -5'
6836 3' -53.9 NC_001875.2 + 111188 0.66 0.926658
Target:  5'- --uUGGGCGCGcUggGCGGcGC-GCGCc -3'
miRNA:   3'- guuACCUGCGC-AuaCGCCaCGuCGUG- -5'
6836 3' -53.9 NC_001875.2 + 9599 0.66 0.924991
Target:  5'- gCGGUGGGCGCGUgcaacgacgcguuuGUGCuaagcugcGUGCGcGCGCc -3'
miRNA:   3'- -GUUACCUGCGCA--------------UACGc-------CACGU-CGUG- -5'
6836 3' -53.9 NC_001875.2 + 38460 0.66 0.915107
Target:  5'- ---cGGcGCGCGcUAgaauUGGUGCAGCGCg -3'
miRNA:   3'- guuaCC-UGCGC-AUac--GCCACGUCGUG- -5'
6836 3' -53.9 NC_001875.2 + 1377 0.66 0.915107
Target:  5'- uCGAacGGCGCGUGcuaGCGGUGCgucagcGGCGCc -3'
miRNA:   3'- -GUUacCUGCGCAUa--CGCCACG------UCGUG- -5'
6836 3' -53.9 NC_001875.2 + 108955 0.66 0.913896
Target:  5'- gGAUGcGGC-CGUGUGCGauagcgaugcgcUGCAGCACg -3'
miRNA:   3'- gUUAC-CUGcGCAUACGCc-----------ACGUCGUG- -5'
6836 3' -53.9 NC_001875.2 + 65753 0.67 0.908949
Target:  5'- ---cGGGCcucgGCGUAUucgugcgcgGCGGgcgGCGGCGCg -3'
miRNA:   3'- guuaCCUG----CGCAUA---------CGCCa--CGUCGUG- -5'
6836 3' -53.9 NC_001875.2 + 89226 0.67 0.908319
Target:  5'- ---aGGAguacacuUGCGUGUugGCGGUGCccAGCGCc -3'
miRNA:   3'- guuaCCU-------GCGCAUA--CGCCACG--UCGUG- -5'
6836 3' -53.9 NC_001875.2 + 116028 0.67 0.902538
Target:  5'- ---cGGcACGCuGUugGUGGUGCAGUACc -3'
miRNA:   3'- guuaCC-UGCG-CAuaCGCCACGUCGUG- -5'
6836 3' -53.9 NC_001875.2 + 37214 0.67 0.902538
Target:  5'- --cUGG-CGCa---GCGGUGCAGCAa -3'
miRNA:   3'- guuACCuGCGcauaCGCCACGUCGUg -5'
6836 3' -53.9 NC_001875.2 + 110338 0.67 0.895877
Target:  5'- cCAAUGGGCGU----GC-GUGUAGCACa -3'
miRNA:   3'- -GUUACCUGCGcauaCGcCACGUCGUG- -5'
6836 3' -53.9 NC_001875.2 + 86122 0.67 0.895877
Target:  5'- -cGUGGACGUGgccaucgGCaGUGCgcGGCGCg -3'
miRNA:   3'- guUACCUGCGCaua----CGcCACG--UCGUG- -5'
6836 3' -53.9 NC_001875.2 + 91874 0.67 0.895877
Target:  5'- ---aGGGCGCc--UGCuGGUGCGGCGg -3'
miRNA:   3'- guuaCCUGCGcauACG-CCACGUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.