miRNA display CGI


Results 1 - 20 of 329 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6836 5' -61.1 NC_001875.2 + 17091 0.66 0.653374
Target:  5'- aGGC-CGgGCAAGCCGC--GCGCCa- -3'
miRNA:   3'- gUUGcGCgCGUUCGGCGagCGCGGgu -5'
6836 5' -61.1 NC_001875.2 + 46531 0.66 0.653374
Target:  5'- gAGCGCcCGC-GGCaauGCcCGCGCCCGc -3'
miRNA:   3'- gUUGCGcGCGuUCGg--CGaGCGCGGGU- -5'
6836 5' -61.1 NC_001875.2 + 68390 0.66 0.653374
Target:  5'- cCAACGCcuCGCGgcuGGCCGC-CGaCGCCgAa -3'
miRNA:   3'- -GUUGCGc-GCGU---UCGGCGaGC-GCGGgU- -5'
6836 5' -61.1 NC_001875.2 + 59221 0.66 0.653374
Target:  5'- uGGCGUGcCGCAGGCCGUaaacaaccUgGagGCCCAa -3'
miRNA:   3'- gUUGCGC-GCGUUCGGCG--------AgCg-CGGGU- -5'
6836 5' -61.1 NC_001875.2 + 117281 0.66 0.653374
Target:  5'- cCGAUGCGCuuCAcgauGGCCGCgUGCGCCa- -3'
miRNA:   3'- -GUUGCGCGc-GU----UCGGCGaGCGCGGgu -5'
6836 5' -61.1 NC_001875.2 + 67675 0.66 0.653374
Target:  5'- -cACGUGCGCAaaguagugGGCCaggaucgaCGCGCCCGu -3'
miRNA:   3'- guUGCGCGCGU--------UCGGcga-----GCGCGGGU- -5'
6836 5' -61.1 NC_001875.2 + 125025 0.66 0.653374
Target:  5'- uCGACGCgGCGC-AGCUGgUUCaGCGaCCCGa -3'
miRNA:   3'- -GUUGCG-CGCGuUCGGC-GAG-CGC-GGGU- -5'
6836 5' -61.1 NC_001875.2 + 99722 0.66 0.65237
Target:  5'- gCGGCGCuCGCAAGUgcgcgccuugucgUGCUCGUGCUg- -3'
miRNA:   3'- -GUUGCGcGCGUUCG-------------GCGAGCGCGGgu -5'
6836 5' -61.1 NC_001875.2 + 6196 0.66 0.65237
Target:  5'- --cCGCGCGCcguuucaAAGCgCGCaaUUGCGUCCGu -3'
miRNA:   3'- guuGCGCGCG-------UUCG-GCG--AGCGCGGGU- -5'
6836 5' -61.1 NC_001875.2 + 119830 0.66 0.644334
Target:  5'- aAGCGUuuGUuGGCCGCgcucgccaccacaccCGCGCCCAa -3'
miRNA:   3'- gUUGCGcgCGuUCGGCGa--------------GCGCGGGU- -5'
6836 5' -61.1 NC_001875.2 + 45228 0.66 0.643329
Target:  5'- -cGCGCGCGaaCAGGCgGCgCGuCGCCUu -3'
miRNA:   3'- guUGCGCGC--GUUCGgCGaGC-GCGGGu -5'
6836 5' -61.1 NC_001875.2 + 7130 0.66 0.643329
Target:  5'- cCGACGCGUGCcuGuuGCUucaccgcaCGUGCCa- -3'
miRNA:   3'- -GUUGCGCGCGuuCggCGA--------GCGCGGgu -5'
6836 5' -61.1 NC_001875.2 + 66085 0.66 0.643329
Target:  5'- cCAGcCGCcgGCuCAGGUCGCUCGUgauGCCCGu -3'
miRNA:   3'- -GUU-GCG--CGcGUUCGGCGAGCG---CGGGU- -5'
6836 5' -61.1 NC_001875.2 + 27989 0.66 0.643329
Target:  5'- aGGCGCGCGCGAGaCCGUUCacaaaauaGUGUaCAa -3'
miRNA:   3'- gUUGCGCGCGUUC-GGCGAG--------CGCGgGU- -5'
6836 5' -61.1 NC_001875.2 + 61632 0.66 0.643329
Target:  5'- gCGGCGCcucggGCGCccaguGGUCGCcgUCGCcGCCCGg -3'
miRNA:   3'- -GUUGCG-----CGCGu----UCGGCG--AGCG-CGGGU- -5'
6836 5' -61.1 NC_001875.2 + 8551 0.66 0.643329
Target:  5'- -cACGUGCgGCGGaaugucaauGCCcuGCUCGCGCaCCAg -3'
miRNA:   3'- guUGCGCG-CGUU---------CGG--CGAGCGCG-GGU- -5'
6836 5' -61.1 NC_001875.2 + 57951 0.66 0.642324
Target:  5'- aAACGCggucGUGCGGGaCCGCcguuucgcgguuuUCGCGCCgCAc -3'
miRNA:   3'- gUUGCG----CGCGUUC-GGCG-------------AGCGCGG-GU- -5'
6836 5' -61.1 NC_001875.2 + 32053 0.66 0.640314
Target:  5'- gAGCGUGCGCGAcGCguaccgcaaaauggCGCUCGUGCa-- -3'
miRNA:   3'- gUUGCGCGCGUU-CG--------------GCGAGCGCGggu -5'
6836 5' -61.1 NC_001875.2 + 71952 0.66 0.633275
Target:  5'- --cCGCGCGCAGccugucGCCGCgaagCuCGUCCAu -3'
miRNA:   3'- guuGCGCGCGUU------CGGCGa---GcGCGGGU- -5'
6836 5' -61.1 NC_001875.2 + 88537 0.66 0.633275
Target:  5'- --cCGCGCGCGcGCCGCUa-C-CCCAu -3'
miRNA:   3'- guuGCGCGCGUuCGGCGAgcGcGGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.