miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6837 3' -54.2 NC_001875.2 + 39279 0.66 0.909351
Target:  5'- gGCGGcuucugccCGCCGACaccaaguGCGC-GCUGCACa -3'
miRNA:   3'- -UGCUuau-----GCGGUUG-------CGCGaCGACGUG- -5'
6837 3' -54.2 NC_001875.2 + 107835 0.66 0.906187
Target:  5'- cGCGcccGGUGCGCCuugcgacGCGCGCgaguuggucgaaacGCUGCAUu -3'
miRNA:   3'- -UGC---UUAUGCGGu------UGCGCGa-------------CGACGUG- -5'
6837 3' -54.2 NC_001875.2 + 87307 0.66 0.916088
Target:  5'- -----cACGCCGcGCGaCGCUGCUGUgaACg -3'
miRNA:   3'- ugcuuaUGCGGU-UGC-GCGACGACG--UG- -5'
6837 3' -54.2 NC_001875.2 + 69430 0.66 0.908093
Target:  5'- cGCGAAgugcuugACGCCGgcguuuGCGCGCcgGCcacgcuaaacaacgUGCGCg -3'
miRNA:   3'- -UGCUUa------UGCGGU------UGCGCGa-CG--------------ACGUG- -5'
6837 3' -54.2 NC_001875.2 + 32235 0.66 0.916088
Target:  5'- -aGA--ACGCCAACGCGCaGacauaccgGCGCg -3'
miRNA:   3'- ugCUuaUGCGGUUGCGCGaCga------CGUG- -5'
6837 3' -54.2 NC_001875.2 + 33474 0.66 0.916088
Target:  5'- uCGAAaguggcGCGCC-GCGCGCUGggGUGCg -3'
miRNA:   3'- uGCUUa-----UGCGGuUGCGCGACgaCGUG- -5'
6837 3' -54.2 NC_001875.2 + 37833 0.66 0.921945
Target:  5'- gGCGAucACGUaCGACaCGCUGC-GCGCg -3'
miRNA:   3'- -UGCUuaUGCG-GUUGcGCGACGaCGUG- -5'
6837 3' -54.2 NC_001875.2 + 68744 0.66 0.921945
Target:  5'- gACGAGcgguUGCuCGACaCGCUGgUGCACa -3'
miRNA:   3'- -UGCUUau--GCG-GUUGcGCGACgACGUG- -5'
6837 3' -54.2 NC_001875.2 + 78231 0.66 0.909976
Target:  5'- cUGAGgcGCGUCAGauUGUGCUGgUGCACg -3'
miRNA:   3'- uGCUUa-UGCGGUU--GCGCGACgACGUG- -5'
6837 3' -54.2 NC_001875.2 + 38442 0.66 0.915488
Target:  5'- uACGAAaGCagcaaguGCCGGCGCGCgcuagaauuggUGCaGCGCg -3'
miRNA:   3'- -UGCUUaUG-------CGGUUGCGCG-----------ACGaCGUG- -5'
6837 3' -54.2 NC_001875.2 + 64592 0.66 0.908093
Target:  5'- -----cGCGCCAccuucugcaacggcACGcCGCUGUUGUACa -3'
miRNA:   3'- ugcuuaUGCGGU--------------UGC-GCGACGACGUG- -5'
6837 3' -54.2 NC_001875.2 + 118315 0.66 0.916088
Target:  5'- uCGAGgcgGCCGGcCGCGC-GCUGCAg -3'
miRNA:   3'- uGCUUaugCGGUU-GCGCGaCGACGUg -5'
6837 3' -54.2 NC_001875.2 + 9126 0.66 0.921945
Target:  5'- cUGAAcAUGCUuuGAUGCGUUGUUGCAa -3'
miRNA:   3'- uGCUUaUGCGG--UUGCGCGACGACGUg -5'
6837 3' -54.2 NC_001875.2 + 79168 0.66 0.903611
Target:  5'- uUGAagGUAgGCCAaaaACGCGUcgugGUUGCACa -3'
miRNA:   3'- uGCU--UAUgCGGU---UGCGCGa---CGACGUG- -5'
6837 3' -54.2 NC_001875.2 + 42189 0.66 0.909976
Target:  5'- cGCGGuuggGCGUuucaaaUAGCGCGCgGCgGCACg -3'
miRNA:   3'- -UGCUua--UGCG------GUUGCGCGaCGaCGUG- -5'
6837 3' -54.2 NC_001875.2 + 85865 0.66 0.903611
Target:  5'- gGCGAGUuCGCCGcagcgGCG-GCU-CUGCGCu -3'
miRNA:   3'- -UGCUUAuGCGGU-----UGCgCGAcGACGUG- -5'
6837 3' -54.2 NC_001875.2 + 39658 0.66 0.909976
Target:  5'- cGCGAGUuuGgGCCGgcgGCGCGCgGCgGCGa -3'
miRNA:   3'- -UGCUUA--UgCGGU---UGCGCGaCGaCGUg -5'
6837 3' -54.2 NC_001875.2 + 31691 0.66 0.909976
Target:  5'- gGCGuggacCGCCGcuuGCGCGCcGCcgGCGCa -3'
miRNA:   3'- -UGCuuau-GCGGU---UGCGCGaCGa-CGUG- -5'
6837 3' -54.2 NC_001875.2 + 105765 0.66 0.932893
Target:  5'- aACGug-ACGCC--CGCGCUGCaaUGgACa -3'
miRNA:   3'- -UGCuuaUGCGGuuGCGCGACG--ACgUG- -5'
6837 3' -54.2 NC_001875.2 + 72584 0.66 0.909976
Target:  5'- uGCGggUGCGg----GCGCUGCggGCGCu -3'
miRNA:   3'- -UGCuuAUGCgguugCGCGACGa-CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.