Results 21 - 40 of 40 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6837 | 5' | -54.9 | NC_001875.2 | + | 117741 | 0.67 | 0.819443 |
Target: 5'- uUGGUGuuGGCAGCGCGUUCGucacaucuaauauaAGUGa--- -3' miRNA: 3'- -ACCGC--CCGUCGCGCGAGU--------------UCAUauuu -5' |
|||||||
6837 | 5' | -54.9 | NC_001875.2 | + | 32794 | 0.68 | 0.794623 |
Target: 5'- gGGCGGGCGcCGCGCcggCAAGc----- -3' miRNA: 3'- aCCGCCCGUcGCGCGa--GUUCauauuu -5' |
|||||||
6837 | 5' | -54.9 | NC_001875.2 | + | 84411 | 0.68 | 0.785126 |
Target: 5'- cGGC-GGCGGCGCGUaUAGGUGc--- -3' miRNA: 3'- aCCGcCCGUCGCGCGaGUUCAUauuu -5' |
|||||||
6837 | 5' | -54.9 | NC_001875.2 | + | 47773 | 0.68 | 0.77548 |
Target: 5'- aGGCGGGCgaaaccaacaugAGCaCGCUCAGGa----- -3' miRNA: 3'- aCCGCCCG------------UCGcGCGAGUUCauauuu -5' |
|||||||
6837 | 5' | -54.9 | NC_001875.2 | + | 80922 | 0.68 | 0.765696 |
Target: 5'- uUGaCGGGCGGCGCuucguugguGCUCAAGUu---- -3' miRNA: 3'- -ACcGCCCGUCGCG---------CGAGUUCAuauuu -5' |
|||||||
6837 | 5' | -54.9 | NC_001875.2 | + | 74372 | 0.68 | 0.765696 |
Target: 5'- gUGcGCGGccGCGGCGCGUUCAGGc----- -3' miRNA: 3'- -AC-CGCC--CGUCGCGCGAGUUCauauuu -5' |
|||||||
6837 | 5' | -54.9 | NC_001875.2 | + | 90461 | 0.68 | 0.765696 |
Target: 5'- cGGUGGGCGGCGCGUa---------- -3' miRNA: 3'- aCCGCCCGUCGCGCGaguucauauuu -5' |
|||||||
6837 | 5' | -54.9 | NC_001875.2 | + | 39667 | 0.69 | 0.755782 |
Target: 5'- gGGCcGGCGGCGCGCggcggCGAGcUGcUAGAg -3' miRNA: 3'- aCCGcCCGUCGCGCGa----GUUC-AU-AUUU- -5' |
|||||||
6837 | 5' | -54.9 | NC_001875.2 | + | 33480 | 0.69 | 0.745749 |
Target: 5'- gUGGCGcGCcGCGCGCUgGGGUGc--- -3' miRNA: 3'- -ACCGCcCGuCGCGCGAgUUCAUauuu -5' |
|||||||
6837 | 5' | -54.9 | NC_001875.2 | + | 5923 | 0.69 | 0.745749 |
Target: 5'- aUGGCguuGGGUAGCGCcGCgCAGGUGg--- -3' miRNA: 3'- -ACCG---CCCGUCGCG-CGaGUUCAUauuu -5' |
|||||||
6837 | 5' | -54.9 | NC_001875.2 | + | 84348 | 0.69 | 0.73561 |
Target: 5'- gUGGCGGaGCGGCuGCGCcggUAGGUGc--- -3' miRNA: 3'- -ACCGCC-CGUCG-CGCGa--GUUCAUauuu -5' |
|||||||
6837 | 5' | -54.9 | NC_001875.2 | + | 63731 | 0.69 | 0.715047 |
Target: 5'- cGGCGGGCgcuucgccGGCGuCGCUCAuGU-UAAAu -3' miRNA: 3'- aCCGCCCG--------UCGC-GCGAGUuCAuAUUU- -5' |
|||||||
6837 | 5' | -54.9 | NC_001875.2 | + | 80618 | 0.7 | 0.673084 |
Target: 5'- cGGUGGGCGcgcggaacGCGCGCUCGAc------ -3' miRNA: 3'- aCCGCCCGU--------CGCGCGAGUUcauauuu -5' |
|||||||
6837 | 5' | -54.9 | NC_001875.2 | + | 33279 | 0.7 | 0.662478 |
Target: 5'- cGGCGGcaGCAGCGCGUUCuugagcacGGUGUc-- -3' miRNA: 3'- aCCGCC--CGUCGCGCGAGu-------UCAUAuuu -5' |
|||||||
6837 | 5' | -54.9 | NC_001875.2 | + | 65775 | 0.71 | 0.641195 |
Target: 5'- cGGCGGGCGGCGgCGCgUCGucguUGAGc -3' miRNA: 3'- aCCGCCCGUCGC-GCG-AGUucauAUUU- -5' |
|||||||
6837 | 5' | -54.9 | NC_001875.2 | + | 106819 | 0.71 | 0.619881 |
Target: 5'- aGGCGGGCGGCcaGCGCa-AAGUAc--- -3' miRNA: 3'- aCCGCCCGUCG--CGCGagUUCAUauuu -5' |
|||||||
6837 | 5' | -54.9 | NC_001875.2 | + | 118321 | 0.71 | 0.598607 |
Target: 5'- cGGCcGGCcGCGCGCUgCAGGUgAUGAAc -3' miRNA: 3'- aCCGcCCGuCGCGCGA-GUUCA-UAUUU- -5' |
|||||||
6837 | 5' | -54.9 | NC_001875.2 | + | 42756 | 0.77 | 0.303152 |
Target: 5'- aUGGUGaGCGGCGCGCUCGGGUcgGc- -3' miRNA: 3'- -ACCGCcCGUCGCGCGAGUUCAuaUuu -5' |
|||||||
6837 | 5' | -54.9 | NC_001875.2 | + | 10459 | 0.81 | 0.164894 |
Target: 5'- cGGCGcGGCGGCGCGCUCA-GUGa--- -3' miRNA: 3'- aCCGC-CCGUCGCGCGAGUuCAUauuu -5' |
|||||||
6837 | 5' | -54.9 | NC_001875.2 | + | 39125 | 1.06 | 0.003497 |
Target: 5'- cUGGCGGGCAGCGCGCUCAAGUAUAAAa -3' miRNA: 3'- -ACCGCCCGUCGCGCGAGUUCAUAUUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home