miRNA display CGI


Results 1 - 20 of 44 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6838 3' -53.5 NC_001875.2 + 45646 0.66 0.932755
Target:  5'- cGGCGGCgccucuaguUUUGCGUaCAGCGCG-UCAAa -3'
miRNA:   3'- -CUGUUG---------AAACGCGaGUCGCGCgAGUU- -5'
6838 3' -53.5 NC_001875.2 + 18752 0.66 0.932755
Target:  5'- cGGCGGCUaagGCGCUgAcGCGCGUcgccaUCAAa -3'
miRNA:   3'- -CUGUUGAaa-CGCGAgU-CGCGCG-----AGUU- -5'
6838 3' -53.5 NC_001875.2 + 28564 0.66 0.932755
Target:  5'- cGCAACUaUGCGCuagUCAGCGUGaaCUCc- -3'
miRNA:   3'- cUGUUGAaACGCG---AGUCGCGC--GAGuu -5'
6838 3' -53.5 NC_001875.2 + 35852 0.66 0.9273
Target:  5'- cGACGACgcgguuuugUUGCGC--AGCGCGUUUGAu -3'
miRNA:   3'- -CUGUUGa--------AACGCGagUCGCGCGAGUU- -5'
6838 3' -53.5 NC_001875.2 + 35379 0.66 0.921581
Target:  5'- aGCAGCUggagGCGCUgcuguccgUGGCGCGCgCGAg -3'
miRNA:   3'- cUGUUGAaa--CGCGA--------GUCGCGCGaGUU- -5'
6838 3' -53.5 NC_001875.2 + 42669 0.66 0.921581
Target:  5'- aGGCugaUUUGCGC-CAGCGUGCaCGAa -3'
miRNA:   3'- -CUGuugAAACGCGaGUCGCGCGaGUU- -5'
6838 3' -53.5 NC_001875.2 + 119423 0.66 0.921581
Target:  5'- cGCAACg--GCcuGCUUGGCGCGCggCAAa -3'
miRNA:   3'- cUGUUGaaaCG--CGAGUCGCGCGa-GUU- -5'
6838 3' -53.5 NC_001875.2 + 96219 0.66 0.921581
Target:  5'- aGAUAguccGCgucgGCGUUgGGCGCGUUCAGg -3'
miRNA:   3'- -CUGU----UGaaa-CGCGAgUCGCGCGAGUU- -5'
6838 3' -53.5 NC_001875.2 + 80863 0.66 0.915596
Target:  5'- --aAGCUgaGCGaCUCGGCGCGCgcCAAa -3'
miRNA:   3'- cugUUGAaaCGC-GAGUCGCGCGa-GUU- -5'
6838 3' -53.5 NC_001875.2 + 77948 0.66 0.909347
Target:  5'- cACAAUuaUUUGCGCcgcggCGGCGCGCaCGAc -3'
miRNA:   3'- cUGUUG--AAACGCGa----GUCGCGCGaGUU- -5'
6838 3' -53.5 NC_001875.2 + 13027 0.67 0.896066
Target:  5'- cGGCAGCUUUGCaaaaAGCGCGCa--- -3'
miRNA:   3'- -CUGUUGAAACGcgagUCGCGCGaguu -5'
6838 3' -53.5 NC_001875.2 + 33431 0.67 0.896066
Target:  5'- cGCAAUgucgUGCGUg-AGCGCGUUCAGc -3'
miRNA:   3'- cUGUUGaa--ACGCGagUCGCGCGAGUU- -5'
6838 3' -53.5 NC_001875.2 + 61464 0.67 0.896066
Target:  5'- cGACAGCg--GCGCgcaauugcugCAGCGCG-UCGAu -3'
miRNA:   3'- -CUGUUGaaaCGCGa---------GUCGCGCgAGUU- -5'
6838 3' -53.5 NC_001875.2 + 73781 0.67 0.889041
Target:  5'- cGACAGC---GCGgUCAGCGUGCaCAAa -3'
miRNA:   3'- -CUGUUGaaaCGCgAGUCGCGCGaGUU- -5'
6838 3' -53.5 NC_001875.2 + 3048 0.67 0.874242
Target:  5'- gGGCAGCgcguaagagGCGCgcagCGGCGCGC-CGGg -3'
miRNA:   3'- -CUGUUGaaa------CGCGa---GUCGCGCGaGUU- -5'
6838 3' -53.5 NC_001875.2 + 67940 0.67 0.874242
Target:  5'- uGCGGCg--GCGCcaCGGCGCGCUUc- -3'
miRNA:   3'- cUGUUGaaaCGCGa-GUCGCGCGAGuu -5'
6838 3' -53.5 NC_001875.2 + 30087 0.68 0.858481
Target:  5'- gGACGAuuCUUUGuUGCUguGCGCGCUg-- -3'
miRNA:   3'- -CUGUU--GAAAC-GCGAguCGCGCGAguu -5'
6838 3' -53.5 NC_001875.2 + 114166 0.68 0.850256
Target:  5'- cGACAagucaaACUgcGCGUUUAGUucGCGCUCAAa -3'
miRNA:   3'- -CUGU------UGAaaCGCGAGUCG--CGCGAGUU- -5'
6838 3' -53.5 NC_001875.2 + 66024 0.68 0.841812
Target:  5'- aGCAGCUgcaaGCGCUUGGCGcCGCgCAGg -3'
miRNA:   3'- cUGUUGAaa--CGCGAGUCGC-GCGaGUU- -5'
6838 3' -53.5 NC_001875.2 + 12192 0.68 0.838375
Target:  5'- cGCAGCUUgggcgcguaaaacGCGUUCAGCGUGCcggUCAGu -3'
miRNA:   3'- cUGUUGAAa------------CGCGAGUCGCGCG---AGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.