Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6838 | 3' | -53.5 | NC_001875.2 | + | 37468 | 1.06 | 0.004788 |
Target: 5'- cGACAACUUUGCGCUCAGCGCGCUCAAc -3' miRNA: 3'- -CUGUUGAAACGCGAGUCGCGCGAGUU- -5' |
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6838 | 3' | -53.5 | NC_001875.2 | + | 10446 | 0.82 | 0.200197 |
Target: 5'- aGCAGCUUUGaCGCggcgcggCGGCGCGCUCAGu -3' miRNA: 3'- cUGUUGAAAC-GCGa------GUCGCGCGAGUU- -5' |
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6838 | 3' | -53.5 | NC_001875.2 | + | 37342 | 0.8 | 0.258803 |
Target: 5'- uGugGACUUUGCGCgcggCcGCGCGCUCGu -3' miRNA: 3'- -CugUUGAAACGCGa---GuCGCGCGAGUu -5' |
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6838 | 3' | -53.5 | NC_001875.2 | + | 74365 | 0.76 | 0.398084 |
Target: 5'- aGACGGCg-UGCGCggccgCGGCGCGUUCAGg -3' miRNA: 3'- -CUGUUGaaACGCGa----GUCGCGCGAGUU- -5' |
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6838 | 3' | -53.5 | NC_001875.2 | + | 63728 | 0.73 | 0.587719 |
Target: 5'- cGACGGCgg-GCGCUucgcCGGCGuCGCUCAu -3' miRNA: 3'- -CUGUUGaaaCGCGA----GUCGC-GCGAGUu -5' |
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6838 | 3' | -53.5 | NC_001875.2 | + | 42824 | 0.73 | 0.598445 |
Target: 5'- uGACAACU-UGCGCUCgcacgcguAGCGCGCa--- -3' miRNA: 3'- -CUGUUGAaACGCGAG--------UCGCGCGaguu -5' |
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6838 | 3' | -53.5 | NC_001875.2 | + | 79128 | 0.72 | 0.619971 |
Target: 5'- cGGCGGCgg-GCGCcgCGGCGgGCUCGu -3' miRNA: 3'- -CUGUUGaaaCGCGa-GUCGCgCGAGUu -5' |
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6838 | 3' | -53.5 | NC_001875.2 | + | 39121 | 0.72 | 0.641537 |
Target: 5'- -uUAGCUg-GCGggCAGCGCGCUCAAg -3' miRNA: 3'- cuGUUGAaaCGCgaGUCGCGCGAGUU- -5' |
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6838 | 3' | -53.5 | NC_001875.2 | + | 24204 | 0.71 | 0.684493 |
Target: 5'- -cCAACUgugGCGCUgAGCGCGCa--- -3' miRNA: 3'- cuGUUGAaa-CGCGAgUCGCGCGaguu -5' |
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6838 | 3' | -53.5 | NC_001875.2 | + | 89505 | 0.71 | 0.713092 |
Target: 5'- uGCGACUgcgcuuccgccugggGcCGCUgGGCGCGCUCGAu -3' miRNA: 3'- cUGUUGAaa-------------C-GCGAgUCGCGCGAGUU- -5' |
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6838 | 3' | -53.5 | NC_001875.2 | + | 42743 | 0.7 | 0.726676 |
Target: 5'- cGCGGCgacGCGCauggugagCGGCGCGCUCGGg -3' miRNA: 3'- cUGUUGaaaCGCGa-------GUCGCGCGAGUU- -5' |
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6838 | 3' | -53.5 | NC_001875.2 | + | 11913 | 0.7 | 0.747267 |
Target: 5'- cGGCGGCgagcagguguUUUGCGCgCGGCGCGC-CGAc -3' miRNA: 3'- -CUGUUG----------AAACGCGaGUCGCGCGaGUU- -5' |
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6838 | 3' | -53.5 | NC_001875.2 | + | 108071 | 0.7 | 0.7574 |
Target: 5'- gGGCAACg-UGCGCUCuGCGgGCUgCAc -3' miRNA: 3'- -CUGUUGaaACGCGAGuCGCgCGA-GUu -5' |
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6838 | 3' | -53.5 | NC_001875.2 | + | 73966 | 0.69 | 0.777286 |
Target: 5'- uGugGAUUUcGCGCaaAGCGUGCUCAu -3' miRNA: 3'- -CugUUGAAaCGCGagUCGCGCGAGUu -5' |
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6838 | 3' | -53.5 | NC_001875.2 | + | 44874 | 0.69 | 0.777286 |
Target: 5'- aGCAcGCUUUGCGCUUuGCGcCGCUUGGa -3' miRNA: 3'- cUGU-UGAAACGCGAGuCGC-GCGAGUU- -5' |
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6838 | 3' | -53.5 | NC_001875.2 | + | 44387 | 0.69 | 0.777286 |
Target: 5'- cACAAUUUUGgGCacgUCGGCGCGCgcgCAc -3' miRNA: 3'- cUGUUGAAACgCG---AGUCGCGCGa--GUu -5' |
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6838 | 3' | -53.5 | NC_001875.2 | + | 122525 | 0.69 | 0.786052 |
Target: 5'- gGGCAGCUucgccgaUUGCGUcCGGCGCGCa--- -3' miRNA: 3'- -CUGUUGA-------AACGCGaGUCGCGCGaguu -5' |
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6838 | 3' | -53.5 | NC_001875.2 | + | 55008 | 0.69 | 0.787018 |
Target: 5'- uGGCGAUUUUGaccaGCgCGGCGCGCUUu- -3' miRNA: 3'- -CUGUUGAAACg---CGaGUCGCGCGAGuu -5' |
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6838 | 3' | -53.5 | NC_001875.2 | + | 67856 | 0.68 | 0.821602 |
Target: 5'- gGGCGACggggUGCGUcgccagauucugguUCAGCGCGgUCGg -3' miRNA: 3'- -CUGUUGaa--ACGCG--------------AGUCGCGCgAGUu -5' |
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6838 | 3' | -53.5 | NC_001875.2 | + | 85249 | 0.68 | 0.824297 |
Target: 5'- cGCGGgUUccGCGCUCGGCGCGgaCAc -3' miRNA: 3'- cUGUUgAAa-CGCGAGUCGCGCgaGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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