miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6838 3' -53.5 NC_001875.2 + 61594 0.68 0.833156
Target:  5'- cGACGGCUcggGCGC-CGGCGgCGCUUc- -3'
miRNA:   3'- -CUGUUGAaa-CGCGaGUCGC-GCGAGuu -5'
6838 3' -53.5 NC_001875.2 + 59896 0.68 0.833156
Target:  5'- cGACAgGCUgcGCGCggAGCGCGCggUCAAg -3'
miRNA:   3'- -CUGU-UGAaaCGCGagUCGCGCG--AGUU- -5'
6838 3' -53.5 NC_001875.2 + 90025 0.68 0.824297
Target:  5'- cGCAACUggccgcgGCGC-CGGCGCGCg--- -3'
miRNA:   3'- cUGUUGAaa-----CGCGaGUCGCGCGaguu -5'
6838 3' -53.5 NC_001875.2 + 85249 0.68 0.824297
Target:  5'- cGCGGgUUccGCGCUCGGCGCGgaCAc -3'
miRNA:   3'- cUGUUgAAa-CGCGAGUCGCGCgaGUu -5'
6838 3' -53.5 NC_001875.2 + 84855 0.68 0.824297
Target:  5'- -cCAACguggUGCGCUCAuCGCgGCUCAc -3'
miRNA:   3'- cuGUUGaa--ACGCGAGUcGCG-CGAGUu -5'
6838 3' -53.5 NC_001875.2 + 67856 0.68 0.821602
Target:  5'- gGGCGACggggUGCGUcgccagauucugguUCAGCGCGgUCGg -3'
miRNA:   3'- -CUGUUGaa--ACGCG--------------AGUCGCGCgAGUu -5'
6838 3' -53.5 NC_001875.2 + 55008 0.69 0.787018
Target:  5'- uGGCGAUUUUGaccaGCgCGGCGCGCUUu- -3'
miRNA:   3'- -CUGUUGAAACg---CGaGUCGCGCGAGuu -5'
6838 3' -53.5 NC_001875.2 + 122525 0.69 0.786052
Target:  5'- gGGCAGCUucgccgaUUGCGUcCGGCGCGCa--- -3'
miRNA:   3'- -CUGUUGA-------AACGCGaGUCGCGCGaguu -5'
6838 3' -53.5 NC_001875.2 + 73966 0.69 0.777286
Target:  5'- uGugGAUUUcGCGCaaAGCGUGCUCAu -3'
miRNA:   3'- -CugUUGAAaCGCGagUCGCGCGAGUu -5'
6838 3' -53.5 NC_001875.2 + 44874 0.69 0.777286
Target:  5'- aGCAcGCUUUGCGCUUuGCGcCGCUUGGa -3'
miRNA:   3'- cUGU-UGAAACGCGAGuCGC-GCGAGUU- -5'
6838 3' -53.5 NC_001875.2 + 44387 0.69 0.777286
Target:  5'- cACAAUUUUGgGCacgUCGGCGCGCgcgCAc -3'
miRNA:   3'- cUGUUGAAACgCG---AGUCGCGCGa--GUu -5'
6838 3' -53.5 NC_001875.2 + 108071 0.7 0.7574
Target:  5'- gGGCAACg-UGCGCUCuGCGgGCUgCAc -3'
miRNA:   3'- -CUGUUGaaACGCGAGuCGCgCGA-GUu -5'
6838 3' -53.5 NC_001875.2 + 11913 0.7 0.747267
Target:  5'- cGGCGGCgagcagguguUUUGCGCgCGGCGCGC-CGAc -3'
miRNA:   3'- -CUGUUG----------AAACGCGaGUCGCGCGaGUU- -5'
6838 3' -53.5 NC_001875.2 + 42743 0.7 0.726676
Target:  5'- cGCGGCgacGCGCauggugagCGGCGCGCUCGGg -3'
miRNA:   3'- cUGUUGaaaCGCGa-------GUCGCGCGAGUU- -5'
6838 3' -53.5 NC_001875.2 + 89505 0.71 0.713092
Target:  5'- uGCGACUgcgcuuccgccugggGcCGCUgGGCGCGCUCGAu -3'
miRNA:   3'- cUGUUGAaa-------------C-GCGAgUCGCGCGAGUU- -5'
6838 3' -53.5 NC_001875.2 + 24204 0.71 0.684493
Target:  5'- -cCAACUgugGCGCUgAGCGCGCa--- -3'
miRNA:   3'- cuGUUGAaa-CGCGAgUCGCGCGaguu -5'
6838 3' -53.5 NC_001875.2 + 39121 0.72 0.641537
Target:  5'- -uUAGCUg-GCGggCAGCGCGCUCAAg -3'
miRNA:   3'- cuGUUGAaaCGCgaGUCGCGCGAGUU- -5'
6838 3' -53.5 NC_001875.2 + 79128 0.72 0.619971
Target:  5'- cGGCGGCgg-GCGCcgCGGCGgGCUCGu -3'
miRNA:   3'- -CUGUUGaaaCGCGa-GUCGCgCGAGUu -5'
6838 3' -53.5 NC_001875.2 + 42824 0.73 0.598445
Target:  5'- uGACAACU-UGCGCUCgcacgcguAGCGCGCa--- -3'
miRNA:   3'- -CUGUUGAaACGCGAG--------UCGCGCGaguu -5'
6838 3' -53.5 NC_001875.2 + 63728 0.73 0.587719
Target:  5'- cGACGGCgg-GCGCUucgcCGGCGuCGCUCAu -3'
miRNA:   3'- -CUGUUGaaaCGCGA----GUCGC-GCGAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.