miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6838 5' -40.7 NC_001875.2 + 64290 0.66 1
Target:  5'- --aUGuGCGACGCgugcugcAAGGcgGAGCUCc -3'
miRNA:   3'- uuaACuUGCUGCGa------UUCUuuUUUGAG- -5'
6838 5' -40.7 NC_001875.2 + 49144 0.67 1
Target:  5'- ---cGAcugGCGGCGCUAccaGGAcGAAAUUCu -3'
miRNA:   3'- uuaaCU---UGCUGCGAU---UCUuUUUUGAG- -5'
6838 5' -40.7 NC_001875.2 + 33818 0.67 1
Target:  5'- ---cGcACGGCGCgcgGGGGAAAAACg- -3'
miRNA:   3'- uuaaCuUGCUGCGa--UUCUUUUUUGag -5'
6838 5' -40.7 NC_001875.2 + 46059 0.68 1
Target:  5'- --aUGAACGGCGC--AGAAAcgGCg- -3'
miRNA:   3'- uuaACUUGCUGCGauUCUUUuuUGag -5'
6838 5' -40.7 NC_001875.2 + 53492 0.68 1
Target:  5'- --gUGGugGACGCgcuc-AAGGACUCg -3'
miRNA:   3'- uuaACUugCUGCGauucuUUUUUGAG- -5'
6838 5' -40.7 NC_001875.2 + 78175 0.67 1
Target:  5'- -uUUGGACGcguacaagcggaACGCUGcggaaaaggaAGAAAAAAUUCa -3'
miRNA:   3'- uuAACUUGC------------UGCGAU----------UCUUUUUUGAG- -5'
6838 5' -40.7 NC_001875.2 + 131300 0.66 1
Target:  5'- --cUGGACGcCGCgcaaaAAGAAGCUCg -3'
miRNA:   3'- uuaACUUGCuGCGauuc-UUUUUUGAG- -5'
6838 5' -40.7 NC_001875.2 + 46248 0.66 1
Target:  5'- cGUUGGugGAgGCgcuAGAAAAcuGGCUUg -3'
miRNA:   3'- uUAACUugCUgCGau-UCUUUU--UUGAG- -5'
6838 5' -40.7 NC_001875.2 + 9676 0.67 1
Target:  5'- --cUGcGCGGCGCUGucGAAAAAAUUg -3'
miRNA:   3'- uuaACuUGCUGCGAUu-CUUUUUUGAg -5'
6838 5' -40.7 NC_001875.2 + 26781 0.69 1
Target:  5'- cGUUGAGCGACGCgccgucGAGGGugguGugUCc -3'
miRNA:   3'- uUAACUUGCUGCGa-----UUCUUuu--UugAG- -5'
6838 5' -40.7 NC_001875.2 + 80926 0.69 1
Target:  5'- ---cGGGCGGCGCUucGuuGGuGCUCa -3'
miRNA:   3'- uuaaCUUGCUGCGAuuCuuUUuUGAG- -5'
6838 5' -40.7 NC_001875.2 + 124940 0.68 1
Target:  5'- ---cGAGCGcACGUUGGucucGGGAAAGCUCu -3'
miRNA:   3'- uuaaCUUGC-UGCGAUU----CUUUUUUGAG- -5'
6838 5' -40.7 NC_001875.2 + 69248 0.67 1
Target:  5'- ---cGAACGGCGCgcuGGGccgcGGCUCg -3'
miRNA:   3'- uuaaCUUGCUGCGau-UCUuuu-UUGAG- -5'
6838 5' -40.7 NC_001875.2 + 78600 0.71 0.999995
Target:  5'- -cUUGAGuCGGCGUgcuuuuuGAAAAAACUCu -3'
miRNA:   3'- uuAACUU-GCUGCGauu----CUUUUUUGAG- -5'
6838 5' -40.7 NC_001875.2 + 38849 0.71 0.99999
Target:  5'- cAUUGAGCGcuacaugaaagcGCGCcAAGAcaAAAAGCUCa -3'
miRNA:   3'- uUAACUUGC------------UGCGaUUCU--UUUUUGAG- -5'
6838 5' -40.7 NC_001875.2 + 54600 0.71 0.999985
Target:  5'- -uUUGcGCGAgGCUGGGcGAAGAUUCg -3'
miRNA:   3'- uuAACuUGCUgCGAUUCuUUUUUGAG- -5'
6838 5' -40.7 NC_001875.2 + 45793 0.72 0.999925
Target:  5'- ---aGGACGugGCggucguuguGGAAAAGCUCa -3'
miRNA:   3'- uuaaCUUGCugCGauu------CUUUUUUGAG- -5'
6838 5' -40.7 NC_001875.2 + 37411 0.73 0.999899
Target:  5'- ---cGAACGGCGCguGGAAGAGGC-Cg -3'
miRNA:   3'- uuaaCUUGCUGCGauUCUUUUUUGaG- -5'
6838 5' -40.7 NC_001875.2 + 125669 0.73 0.999865
Target:  5'- ---aGAGCGugGCUuc-GGGAAACUCg -3'
miRNA:   3'- uuaaCUUGCugCGAuucUUUUUUGAG- -5'
6838 5' -40.7 NC_001875.2 + 37502 1.11 0.063516
Target:  5'- aAAUUGAACGACGCUAAGAAAAAACUCa -3'
miRNA:   3'- -UUAACUUGCUGCGAUUCUUUUUUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.