miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 3' -54.8 NC_001875.2 + 118458 0.66 0.903611
Target:  5'- cGCCUg--GugCCGUGcguagaaacGGUGCGCAc -3'
miRNA:   3'- -UGGAaaaCugGGCACua-------CCGCGCGUu -5'
6840 3' -54.8 NC_001875.2 + 93981 0.66 0.890135
Target:  5'- cGCCgUUUUGuaaugUuuGUGGUGcGCGCGCAGc -3'
miRNA:   3'- -UGG-AAAACu----GggCACUAC-CGCGCGUU- -5'
6840 3' -54.8 NC_001875.2 + 90382 0.66 0.88303
Target:  5'- gGCCg---GGCUCGUcGAUGGCGCuaAAc -3'
miRNA:   3'- -UGGaaaaCUGGGCA-CUACCGCGcgUU- -5'
6840 3' -54.8 NC_001875.2 + 68697 0.66 0.875687
Target:  5'- uGCCcgugGACCCGUGcgccGGCcGCGCGc -3'
miRNA:   3'- -UGGaaaaCUGGGCACua--CCG-CGCGUu -5'
6840 3' -54.8 NC_001875.2 + 102120 0.67 0.868111
Target:  5'- cGCCU--UGGCCCGUGAgcaacuucacGGCGUGg-- -3'
miRNA:   3'- -UGGAaaACUGGGCACUa---------CCGCGCguu -5'
6840 3' -54.8 NC_001875.2 + 122700 0.67 0.868111
Target:  5'- cGCCgug-GACaCCGaacUGGCGCGCGAg -3'
miRNA:   3'- -UGGaaaaCUG-GGCacuACCGCGCGUU- -5'
6840 3' -54.8 NC_001875.2 + 33955 0.67 0.868111
Target:  5'- cGCCcgcaacgUG-CCCGUGc-GGCGCGCAGc -3'
miRNA:   3'- -UGGaaa----ACuGGGCACuaCCGCGCGUU- -5'
6840 3' -54.8 NC_001875.2 + 120748 0.67 0.868111
Target:  5'- cGCCgagacgGGgCCGUGuccagGGCGCGCGc -3'
miRNA:   3'- -UGGaaaa--CUgGGCACua---CCGCGCGUu -5'
6840 3' -54.8 NC_001875.2 + 70141 0.67 0.867341
Target:  5'- gGCCUacaaaugcgcugUUUGACCCGUuugcgGAcaggguuUGGCGCaGCGAg -3'
miRNA:   3'- -UGGA------------AAACUGGGCA-----CU-------ACCGCG-CGUU- -5'
6840 3' -54.8 NC_001875.2 + 79244 0.67 0.844048
Target:  5'- aGCUguuuaaGCUgGUGGUGGCGCGCGu -3'
miRNA:   3'- -UGGaaaac-UGGgCACUACCGCGCGUu -5'
6840 3' -54.8 NC_001875.2 + 14159 0.68 0.799939
Target:  5'- aGCCUUcaGACaCGUGAUGGggccgUGCGCAAa -3'
miRNA:   3'- -UGGAAaaCUGgGCACUACC-----GCGCGUU- -5'
6840 3' -54.8 NC_001875.2 + 92959 0.69 0.761678
Target:  5'- cACCUUgUUGACgaaCGUGAgcuuuuugucuUGGCGCGCu- -3'
miRNA:   3'- -UGGAA-AACUGg--GCACU-----------ACCGCGCGuu -5'
6840 3' -54.8 NC_001875.2 + 69001 0.72 0.584879
Target:  5'- uGCCgcgggGGCaagcaCGUGGUGGCGCGCu- -3'
miRNA:   3'- -UGGaaaa-CUGg----GCACUACCGCGCGuu -5'
6840 3' -54.8 NC_001875.2 + 13988 0.72 0.584879
Target:  5'- aACCUgUUUGACCUgGUGGUGGCGguugaGCGAa -3'
miRNA:   3'- -UGGA-AAACUGGG-CACUACCGCg----CGUU- -5'
6840 3' -54.8 NC_001875.2 + 102988 0.72 0.563952
Target:  5'- cCCUgcgGGCaCGUGGUGGCGUGCGg -3'
miRNA:   3'- uGGAaaaCUGgGCACUACCGCGCGUu -5'
6840 3' -54.8 NC_001875.2 + 74614 0.73 0.5006
Target:  5'- gACCaacaucgcGCCCGUGAUGGCGUGCu- -3'
miRNA:   3'- -UGGaaaac---UGGGCACUACCGCGCGuu -5'
6840 3' -54.8 NC_001875.2 + 125692 0.74 0.482781
Target:  5'- uACCUgcaaGACCUGU--UGGCGCGCAAg -3'
miRNA:   3'- -UGGAaaa-CUGGGCAcuACCGCGCGUU- -5'
6840 3' -54.8 NC_001875.2 + 2275 0.74 0.473015
Target:  5'- gGCCaugUUGACgUCGUGAUGcGCGCGCGc -3'
miRNA:   3'- -UGGaa-AACUG-GGCACUAC-CGCGCGUu -5'
6840 3' -54.8 NC_001875.2 + 35779 1.06 0.00415
Target:  5'- cACCUUUUGACCCGUGAUGGCGCGCAAa -3'
miRNA:   3'- -UGGAAAACUGGGCACUACCGCGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.