miRNA display CGI


Results 41 - 60 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 102566 0.66 0.722986
Target:  5'- gAC-CGCGCcCCGCcgGCGCGGUcgGcGGCc -3'
miRNA:   3'- -UGaGCGCGcGGUG--CGUGUCGuaC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 115906 0.66 0.693299
Target:  5'- uGCUgGCGC-CC-CGC-CAGC-UGGGUc -3'
miRNA:   3'- -UGAgCGCGcGGuGCGuGUCGuACCCG- -5'
6840 5' -59.8 NC_001875.2 + 91623 0.66 0.702263
Target:  5'- --aCGCGCGUUuCGC-CGGCGccaauuuccgugaUGGGCa -3'
miRNA:   3'- ugaGCGCGCGGuGCGuGUCGU-------------ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 11963 0.66 0.703256
Target:  5'- gGCggCGCGUugcaaaGCaCugGCgACGGCGUuGGGCg -3'
miRNA:   3'- -UGa-GCGCG------CG-GugCG-UGUCGUA-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 115295 0.66 0.693299
Target:  5'- ---aGCGCGCCGCGCACGucauuguauuGCAcGcGCg -3'
miRNA:   3'- ugagCGCGCGGUGCGUGU----------CGUaCcCG- -5'
6840 5' -59.8 NC_001875.2 + 77743 0.66 0.693299
Target:  5'- --aCGUGCGCUggcaGCGCAUcgacccCGUGGGCg -3'
miRNA:   3'- ugaGCGCGCGG----UGCGUGuc----GUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 71897 0.66 0.683292
Target:  5'- uACUCGuCGaccaGCCGCGaCACGGCAcugaUGaGCg -3'
miRNA:   3'- -UGAGC-GCg---CGGUGC-GUGUCGU----ACcCG- -5'
6840 5' -59.8 NC_001875.2 + 57669 0.66 0.722986
Target:  5'- aGCUCGCaaaacGCGuCCAaGCugGCGGCGgcGGGCg -3'
miRNA:   3'- -UGAGCG-----CGC-GGUgCG--UGUCGUa-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 30202 0.66 0.714141
Target:  5'- --aCGUGUGCUACGCGuCAGCGgcgacccugcuuuucGGGUg -3'
miRNA:   3'- ugaGCGCGCGGUGCGU-GUCGUa--------------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 43858 0.66 0.722986
Target:  5'- uGCgCGgGCGUCGCGUAC-GC--GGGCg -3'
miRNA:   3'- -UGaGCgCGCGGUGCGUGuCGuaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 66054 0.66 0.700275
Target:  5'- cAC-CGCGCGCCgACGCcGCGcGCGUGcucgcccagccgccGGCu -3'
miRNA:   3'- -UGaGCGCGCGG-UGCG-UGU-CGUAC--------------CCG- -5'
6840 5' -59.8 NC_001875.2 + 83798 0.66 0.693299
Target:  5'- --gCGCGCGCCcuCGUGCcu-GUGGGCg -3'
miRNA:   3'- ugaGCGCGCGGu-GCGUGucgUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 36703 0.66 0.703256
Target:  5'- --aCGCcaaCGUCAacaGCaACGGCGUGGGCu -3'
miRNA:   3'- ugaGCGc--GCGGUg--CG-UGUCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 89015 0.66 0.713155
Target:  5'- cGCUaCGCGUGCgaGCGCAaguugucauuCAGCGUgcccgugcgcGGGCu -3'
miRNA:   3'- -UGA-GCGCGCGg-UGCGU----------GUCGUA----------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 94476 0.66 0.713155
Target:  5'- aGCggCGCGCGCguuCGCACgAGCGcGcGGCc -3'
miRNA:   3'- -UGa-GCGCGCGgu-GCGUG-UCGUaC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 125340 0.66 0.703256
Target:  5'- gGCggccaGCGUG-UugGCGCGGCAcuccgcguUGGGCg -3'
miRNA:   3'- -UGag---CGCGCgGugCGUGUCGU--------ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 31703 0.67 0.630776
Target:  5'- cGCUUGCGCGCCGCcgGCGCAuuacuuucGGCg -3'
miRNA:   3'- -UGAGCGCGCGGUG--CGUGUcguac---CCG- -5'
6840 5' -59.8 NC_001875.2 + 3775 0.67 0.663162
Target:  5'- uUUCGCGCGCaauguCGUcCAGU-UGGGCc -3'
miRNA:   3'- uGAGCGCGCGgu---GCGuGUCGuACCCG- -5'
6840 5' -59.8 NC_001875.2 + 6193 0.67 0.663162
Target:  5'- uGCcCGCGCGCCguuucaaaGCGCGCAauuGCGUccgucGGCg -3'
miRNA:   3'- -UGaGCGCGCGG--------UGCGUGU---CGUAc----CCG- -5'
6840 5' -59.8 NC_001875.2 + 37878 0.67 0.663162
Target:  5'- aACg-GCGgGCCGCGC-CAGCGgcuugcUGGcGCg -3'
miRNA:   3'- -UGagCGCgCGGUGCGuGUCGU------ACC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.