miRNA display CGI


Results 81 - 100 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 6749 0.67 0.622671
Target:  5'- --aCGCGCagcaacgauguGCCGCGCauucGCGGCGUguuucaGGGCa -3'
miRNA:   3'- ugaGCGCG-----------CGGUGCG----UGUCGUA------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 2659 0.67 0.663162
Target:  5'- uACUUGCgGCGCCG---GCGGCGccugGGGCa -3'
miRNA:   3'- -UGAGCG-CGCGGUgcgUGUCGUa---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 89110 0.67 0.642933
Target:  5'- --gCGCGuCGCCGCGCGCGaCGaccGGGUg -3'
miRNA:   3'- ugaGCGC-GCGGUGCGUGUcGUa--CCCG- -5'
6840 5' -59.8 NC_001875.2 + 32569 0.67 0.642933
Target:  5'- gGCUgcaGCaGUGCCGCGCGCAccucgacuaGCcGUGGGUu -3'
miRNA:   3'- -UGAg--CG-CGCGGUGCGUGU---------CG-UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 53537 0.67 0.653056
Target:  5'- -gUCGUGCGCUACcaGCGCGagccGCAaacGGGCu -3'
miRNA:   3'- ugAGCGCGCGGUG--CGUGU----CGUa--CCCG- -5'
6840 5' -59.8 NC_001875.2 + 59626 0.67 0.642933
Target:  5'- gAUUgGCGgaCGCCGCGuCGCuGGCucGUGGGCu -3'
miRNA:   3'- -UGAgCGC--GCGGUGC-GUG-UCG--UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 19474 0.67 0.642933
Target:  5'- gGCUCGgGCG-CugGUGCuGGCGgcucGGGCa -3'
miRNA:   3'- -UGAGCgCGCgGugCGUG-UCGUa---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 131537 0.67 0.609512
Target:  5'- aGCggaGCGCGgacgaggugcuggaCCugGC-CAGCAUGcGGCg -3'
miRNA:   3'- -UGag-CGCGC--------------GGugCGuGUCGUAC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 77832 0.67 0.612547
Target:  5'- uACgCGCGCGCCgcaaggccguGCGCGacCAGC-UGcGGCa -3'
miRNA:   3'- -UGaGCGCGCGG----------UGCGU--GUCGuAC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 5882 0.67 0.622671
Target:  5'- cCUCGCcgauGCGCCGaaccauguaguCGUACAGCGccGGCa -3'
miRNA:   3'- uGAGCG----CGCGGU-----------GCGUGUCGUacCCG- -5'
6840 5' -59.8 NC_001875.2 + 62461 0.67 0.622671
Target:  5'- --aCGUGCGUUucgguggacgGCGCGCAGC--GGGCg -3'
miRNA:   3'- ugaGCGCGCGG----------UGCGUGUCGuaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 37046 0.67 0.622671
Target:  5'- cACggCGCGUGCaCGCGCGCGGacgcGGCc -3'
miRNA:   3'- -UGa-GCGCGCG-GUGCGUGUCguacCCG- -5'
6840 5' -59.8 NC_001875.2 + 8478 0.67 0.612547
Target:  5'- -gUCGCGCggaaacaccacGCCGgGCGCcguccGUGUGGGCg -3'
miRNA:   3'- ugAGCGCG-----------CGGUgCGUGu----CGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 54593 0.67 0.612547
Target:  5'- gGCggCGCGC-CCACgGCGCGGUAUcGGUg -3'
miRNA:   3'- -UGa-GCGCGcGGUG-CGUGUCGUAcCCG- -5'
6840 5' -59.8 NC_001875.2 + 82708 0.67 0.612547
Target:  5'- ---aGCGcCGCCAguCGCGCAGgGgcacgGGGCa -3'
miRNA:   3'- ugagCGC-GCGGU--GCGUGUCgUa----CCCG- -5'
6840 5' -59.8 NC_001875.2 + 26216 0.67 0.612547
Target:  5'- uACUCgGCGaccaggGCCGCGUACcggGGCAUGGcgGCg -3'
miRNA:   3'- -UGAG-CGCg-----CGGUGCGUG---UCGUACC--CG- -5'
6840 5' -59.8 NC_001875.2 + 128008 0.67 0.663162
Target:  5'- gGCU-GCG-GCCGCGC-CGGCGUGcGCc -3'
miRNA:   3'- -UGAgCGCgCGGUGCGuGUCGUACcCG- -5'
6840 5' -59.8 NC_001875.2 + 46615 0.67 0.622671
Target:  5'- cGCUCGUcgacaugcgGCGCUAcCGCGCGGCGgcccgucGGCu -3'
miRNA:   3'- -UGAGCG---------CGCGGU-GCGUGUCGUac-----CCG- -5'
6840 5' -59.8 NC_001875.2 + 3136 0.67 0.622671
Target:  5'- gGCgaaGCcCGCUGCGCggacGCGGCGUcGGGCg -3'
miRNA:   3'- -UGag-CGcGCGGUGCG----UGUCGUA-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 75956 0.67 0.612547
Target:  5'- gAC-CGCG-GCCAUcgGCACAGUcgagGGGCu -3'
miRNA:   3'- -UGaGCGCgCGGUG--CGUGUCGua--CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.