Results 101 - 120 of 250 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6840 | 5' | -59.8 | NC_001875.2 | + | 82708 | 0.67 | 0.612547 |
Target: 5'- ---aGCGcCGCCAguCGCGCAGgGgcacgGGGCa -3' miRNA: 3'- ugagCGC-GCGGU--GCGUGUCgUa----CCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 2623 | 0.67 | 0.632802 |
Target: 5'- cGCUCGaaucCGUGCCaAUGUACAcgAUGGGCu -3' miRNA: 3'- -UGAGC----GCGCGG-UGCGUGUcgUACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 65807 | 0.67 | 0.632802 |
Target: 5'- aGCUUGaGCGgaauguacuCCACGCGCu-CGUGGGCg -3' miRNA: 3'- -UGAGCgCGC---------GGUGCGUGucGUACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 79491 | 0.67 | 0.642933 |
Target: 5'- cGCUgGCGCGgCACGCGCcGCAcuugaaauUGuGCa -3' miRNA: 3'- -UGAgCGCGCgGUGCGUGuCGU--------ACcCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 32796 | 0.68 | 0.58229 |
Target: 5'- --nCGgGCGCCGCGC-CGGCAagcucGGCg -3' miRNA: 3'- ugaGCgCGCGGUGCGuGUCGUac---CCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 39640 | 0.68 | 0.58229 |
Target: 5'- gGCgCGCaGCGaaCCGCGCGCgAGUuUGGGCc -3' miRNA: 3'- -UGaGCG-CGC--GGUGCGUG-UCGuACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 33804 | 0.68 | 0.572265 |
Target: 5'- cACUUGCcCGUCgGCGCACGGCGcgcgGGGg -3' miRNA: 3'- -UGAGCGcGCGG-UGCGUGUCGUa---CCCg -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 3861 | 0.68 | 0.589328 |
Target: 5'- gUUCGUGUGgCACG-GCAGCAccgcgccgccaagcUGGGCa -3' miRNA: 3'- uGAGCGCGCgGUGCgUGUCGU--------------ACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 64773 | 0.68 | 0.562282 |
Target: 5'- uCUCGCGCGCCA-GCucCAGCGgcuuGGUu -3' miRNA: 3'- uGAGCGCGCGGUgCGu-GUCGUac--CCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 86096 | 0.68 | 0.562282 |
Target: 5'- gGCUCG-GCGCCGCGUuuACGGCuucgcGUGGa- -3' miRNA: 3'- -UGAGCgCGCGGUGCG--UGUCG-----UACCcg -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 77917 | 0.68 | 0.58229 |
Target: 5'- --gUGCGCGCCaACGCGCccGCAacGGCg -3' miRNA: 3'- ugaGCGCGCGG-UGCGUGu-CGUacCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 50366 | 0.68 | 0.599409 |
Target: 5'- gGCcgCGCGCGCCAcugacCGCGgacCAGCGUGuacuuuuugcggacGGCg -3' miRNA: 3'- -UGa-GCGCGCGGU-----GCGU---GUCGUAC--------------CCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 97879 | 0.68 | 0.592349 |
Target: 5'- gGCU-GCGCGCCGCacggGCACguugcgGGCGUcGGCg -3' miRNA: 3'- -UGAgCGCGCGGUG----CGUG------UCGUAcCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 20885 | 0.68 | 0.592349 |
Target: 5'- aACUCGUgcuccugcaGCGCCAgcccguCGCAUuguucGUGUGGGCg -3' miRNA: 3'- -UGAGCG---------CGCGGU------GCGUGu----CGUACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 24193 | 0.68 | 0.581285 |
Target: 5'- uACUUGUuugcccaacugugGCGCUgaGCGCGCAGUAUGcguuGGCa -3' miRNA: 3'- -UGAGCG-------------CGCGG--UGCGUGUCGUAC----CCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 29259 | 0.68 | 0.572265 |
Target: 5'- uGCgggUGCGCGgccgccgaCCGCGC-CGGCG-GGGCg -3' miRNA: 3'- -UGa--GCGCGC--------GGUGCGuGUCGUaCCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 42209 | 0.68 | 0.572265 |
Target: 5'- ---aGCGCGCgGCgGCAC-GCGUGGuGCu -3' miRNA: 3'- ugagCGCGCGgUG-CGUGuCGUACC-CG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 98034 | 0.68 | 0.562282 |
Target: 5'- --cCGCGCGCCGUGCGCcGac-GGGCa -3' miRNA: 3'- ugaGCGCGCGGUGCGUGuCguaCCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 74076 | 0.68 | 0.562282 |
Target: 5'- --gUGCGCGCCccuCGCAaaaccuGCAguUGGGCa -3' miRNA: 3'- ugaGCGCGCGGu--GCGUgu----CGU--ACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 72254 | 0.68 | 0.562282 |
Target: 5'- uGCUCGCGCacgucgGCCACGCuGCAGCGc---- -3' miRNA: 3'- -UGAGCGCG------CGGUGCG-UGUCGUacccg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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