miRNA display CGI


Results 21 - 40 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 120417 0.73 0.317558
Target:  5'- gGCUggaaGUGCGCaguCGCACGGCG-GGGCa -3'
miRNA:   3'- -UGAg---CGCGCGgu-GCGUGUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 130212 0.73 0.310438
Target:  5'- -aUCGCGUGUCGgGCACAGCGcguucuuugccGGGCa -3'
miRNA:   3'- ugAGCGCGCGGUgCGUGUCGUa----------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 19848 0.73 0.324801
Target:  5'- aACagCGCGCaagacucgGCCGCGuCGCGGCGcGGGCg -3'
miRNA:   3'- -UGa-GCGCG--------CGGUGC-GUGUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 32092 0.73 0.310438
Target:  5'- gGCUUGCGCGUCACaGCACgAGCAcgacaaGGCg -3'
miRNA:   3'- -UGAGCGCGCGGUG-CGUG-UCGUac----CCG- -5'
6840 5' -59.8 NC_001875.2 + 1024 0.73 0.30344
Target:  5'- uGCagCGCGUggcgggGCCcgagGCGCACAGCGUuGGGCg -3'
miRNA:   3'- -UGa-GCGCG------CGG----UGCGUGUCGUA-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 13744 0.72 0.362841
Target:  5'- cACUCGCgcgGCGUCGCGCACAaaGUGGugGCa -3'
miRNA:   3'- -UGAGCG---CGCGGUGCGUGUcgUACC--CG- -5'
6840 5' -59.8 NC_001875.2 + 21558 0.72 0.354991
Target:  5'- uAC-CGCGgGCCGCGCGauauUAGCGUGGacGCg -3'
miRNA:   3'- -UGaGCGCgCGGUGCGU----GUCGUACC--CG- -5'
6840 5' -59.8 NC_001875.2 + 42588 0.72 0.37081
Target:  5'- cACgCGCGCGUCA-GCuCGGCGcUGGGCa -3'
miRNA:   3'- -UGaGCGCGCGGUgCGuGUCGU-ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 43027 0.72 0.378898
Target:  5'- uGC-CGCGCGCCGCgGCGC-GC--GGGCu -3'
miRNA:   3'- -UGaGCGCGCGGUG-CGUGuCGuaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 110830 0.72 0.339653
Target:  5'- cGCUgGUGCGCCGCGgACuGUAUuugucguacGGGCa -3'
miRNA:   3'- -UGAgCGCGCGGUGCgUGuCGUA---------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 80638 0.72 0.378898
Target:  5'- cGCUCGacgggcgGCGCCAgaacCGCGCcGuCGUGGGCa -3'
miRNA:   3'- -UGAGCg------CGCGGU----GCGUGuC-GUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 130817 0.72 0.347261
Target:  5'- cCUCGgGCcccGCCACGCGCuGCAagaacGGGCc -3'
miRNA:   3'- uGAGCgCG---CGGUGCGUGuCGUa----CCCG- -5'
6840 5' -59.8 NC_001875.2 + 110576 0.72 0.354991
Target:  5'- uGCUCGUagccGCGCCGCGCGCGcGCcUGGa- -3'
miRNA:   3'- -UGAGCG----CGCGGUGCGUGU-CGuACCcg -5'
6840 5' -59.8 NC_001875.2 + 74495 0.72 0.354991
Target:  5'- uACUUGCGguuuCGCCGCGCGCAGCGcUGccGCa -3'
miRNA:   3'- -UGAGCGC----GCGGUGCGUGUCGU-ACc-CG- -5'
6840 5' -59.8 NC_001875.2 + 92173 0.72 0.354991
Target:  5'- aGCUCGC-CGCCGCGCGCcGCc--GGCc -3'
miRNA:   3'- -UGAGCGcGCGGUGCGUGuCGuacCCG- -5'
6840 5' -59.8 NC_001875.2 + 98597 0.72 0.362841
Target:  5'- aACUCGgaGCGCCGCGCcgaaACGGCGcccGGCg -3'
miRNA:   3'- -UGAGCg-CGCGGUGCG----UGUCGUac-CCG- -5'
6840 5' -59.8 NC_001875.2 + 107636 0.72 0.37081
Target:  5'- uACU-GCGCGCUcaGCGcCACAGU-UGGGCa -3'
miRNA:   3'- -UGAgCGCGCGG--UGC-GUGUCGuACCCG- -5'
6840 5' -59.8 NC_001875.2 + 31116 0.72 0.37081
Target:  5'- --aCGCGUGCCGCGCgccGCAGCAaUGuGCa -3'
miRNA:   3'- ugaGCGCGCGGUGCG---UGUCGU-ACcCG- -5'
6840 5' -59.8 NC_001875.2 + 90670 0.72 0.347261
Target:  5'- cGCUgGCGCugggGCUGCGCACAGuCAacgaGGGCa -3'
miRNA:   3'- -UGAgCGCG----CGGUGCGUGUC-GUa---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 18665 0.72 0.347261
Target:  5'- ---aGCGCGUCACgGUGCGGCugcUGGGCg -3'
miRNA:   3'- ugagCGCGCGGUG-CGUGUCGu--ACCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.