Results 81 - 100 of 250 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6840 | 5' | -59.8 | NC_001875.2 | + | 40432 | 0.69 | 0.541479 |
Target: 5'- gGCUgaCGCGCGCCaucgagaACGUggGCAGCcccgaGGGCg -3' miRNA: 3'- -UGA--GCGCGCGG-------UGCG--UGUCGua---CCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 44402 | 0.69 | 0.532642 |
Target: 5'- -gUCG-GCGCgCGCGCACuGCAaguuggugGGGCg -3' miRNA: 3'- ugAGCgCGCG-GUGCGUGuCGUa-------CCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 65765 | 0.69 | 0.513195 |
Target: 5'- uAUUCGUGCGCgGCGgGCGGC---GGCg -3' miRNA: 3'- -UGAGCGCGCGgUGCgUGUCGuacCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 634 | 0.69 | 0.531663 |
Target: 5'- ---aGCGCGCCcuGCGUuuGCAGCGUcucaaacagguccGGGCa -3' miRNA: 3'- ugagCGCGCGG--UGCG--UGUCGUA-------------CCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 71941 | 0.69 | 0.513195 |
Target: 5'- gAC-CGCGCGCUccGCGCGCAGCcUGucGCc -3' miRNA: 3'- -UGaGCGCGCGG--UGCGUGUCGuACc-CG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 66291 | 0.69 | 0.517062 |
Target: 5'- cGCUC-UGCGUCAaaUGCGCggccggcgaguugauGGCGUGGGCg -3' miRNA: 3'- -UGAGcGCGCGGU--GCGUG---------------UCGUACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 69066 | 0.69 | 0.517062 |
Target: 5'- gACUUGCGUGCaaACGCACcccugcgcguucaacGGCGcGGGCc -3' miRNA: 3'- -UGAGCGCGCGg-UGCGUG---------------UCGUaCCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 47681 | 0.69 | 0.522883 |
Target: 5'- cGCg-GCGCGCCGCGCGuuucuCAacGCG-GGGCa -3' miRNA: 3'- -UGagCGCGCGGUGCGU-----GU--CGUaCCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 54457 | 0.69 | 0.494046 |
Target: 5'- aGC-CGCgGCGCC--GCACAGCGUGugcGGCa -3' miRNA: 3'- -UGaGCG-CGCGGugCGUGUCGUAC---CCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 102164 | 0.69 | 0.522883 |
Target: 5'- aGCUCGUugGCGUuccaacugggCGCGUACAGCGUGGu- -3' miRNA: 3'- -UGAGCG--CGCG----------GUGCGUGUCGUACCcg -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 37112 | 0.69 | 0.513195 |
Target: 5'- uGCgggCGCgGCGCCGCGC-CGGCGUuuGCg -3' miRNA: 3'- -UGa--GCG-CGCGGUGCGuGUCGUAccCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 225 | 0.69 | 0.494046 |
Target: 5'- -gUCGCGCGCCaucaaauuGCGCACGuuuuucagcGCGgcgGGGUc -3' miRNA: 3'- ugAGCGCGCGG--------UGCGUGU---------CGUa--CCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 32908 | 0.69 | 0.503581 |
Target: 5'- cACgCGCGCGUCGCGCACGcGCAaccGCg -3' miRNA: 3'- -UGaGCGCGCGGUGCGUGU-CGUaccCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 43982 | 0.69 | 0.503581 |
Target: 5'- -gUCGCcgacCGCCACGgACAGCccgacGGGCg -3' miRNA: 3'- ugAGCGc---GCGGUGCgUGUCGua---CCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 35000 | 0.69 | 0.49785 |
Target: 5'- --gCGCGCGCCgucaaacaaggcGCGCauaacguccagcuugACGGCGcUGGGCa -3' miRNA: 3'- ugaGCGCGCGG------------UGCG---------------UGUCGU-ACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 42164 | 0.69 | 0.494046 |
Target: 5'- -gUCGCGCGgUcaaacguaaacgACGCGCGGU-UGGGCg -3' miRNA: 3'- ugAGCGCGCgG------------UGCGUGUCGuACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 121438 | 0.69 | 0.494046 |
Target: 5'- uGCagCGgGUGCCGCGcCACGGCGcgGcGGCg -3' miRNA: 3'- -UGa-GCgCGCGGUGC-GUGUCGUa-C-CCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 93249 | 0.69 | 0.494046 |
Target: 5'- cCUCGaCGCGCagCugGCccguguagaGCAGgAUGGGCa -3' miRNA: 3'- uGAGC-GCGCG--GugCG---------UGUCgUACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 128737 | 0.69 | 0.522883 |
Target: 5'- uCUgCGCGCgaGCCGCGCccCGGCgcgugcacgccGUGGGCg -3' miRNA: 3'- uGA-GCGCG--CGGUGCGu-GUCG-----------UACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 50844 | 0.69 | 0.503581 |
Target: 5'- cGCgUCGCGCGCCuuuuucaGCAgCAGCuuuugcucGGGCg -3' miRNA: 3'- -UG-AGCGCGCGGug-----CGU-GUCGua------CCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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