miRNA display CGI


Results 41 - 60 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 80638 0.72 0.378898
Target:  5'- cGCUCGacgggcgGCGCCAgaacCGCGCcGuCGUGGGCa -3'
miRNA:   3'- -UGAGCg------CGCGGU----GCGUGuC-GUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 43027 0.72 0.378898
Target:  5'- uGC-CGCGCGCCGCgGCGC-GC--GGGCu -3'
miRNA:   3'- -UGaGCGCGCGGUG-CGUGuCGuaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 59928 0.72 0.378898
Target:  5'- cGCUCGC-CGaCGCGCAC-GCccaGUGGGCg -3'
miRNA:   3'- -UGAGCGcGCgGUGCGUGuCG---UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 100696 0.71 0.387104
Target:  5'- gACUcCGCGCGCgGCGCGuuaAGCAUGcacauugcugcGGCg -3'
miRNA:   3'- -UGA-GCGCGCGgUGCGUg--UCGUAC-----------CCG- -5'
6840 5' -59.8 NC_001875.2 + 48739 0.71 0.390419
Target:  5'- --gCGCGgGCCA-GCACAGUagcacguacgacgugGUGGGCa -3'
miRNA:   3'- ugaGCGCgCGGUgCGUGUCG---------------UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 113398 0.71 0.390419
Target:  5'- gAUUCGCGCGCCACGCggaccGCGccucgcgccgaguacGCAaUGGGa -3'
miRNA:   3'- -UGAGCGCGCGGUGCG-----UGU---------------CGU-ACCCg -5'
6840 5' -59.8 NC_001875.2 + 61598 0.71 0.392917
Target:  5'- gGCUCGgGCGCCggcgGCGCuucgggcugugucgGCGGCGccucGGGCg -3'
miRNA:   3'- -UGAGCgCGCGG----UGCG--------------UGUCGUa---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 100873 0.71 0.395426
Target:  5'- aGCgCGagGCGCaGCGCGC-GCGUGGGCg -3'
miRNA:   3'- -UGaGCg-CGCGgUGCGUGuCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 124748 0.71 0.395426
Target:  5'- gGCagCGCGCGCUgcaugucuGCGCACAgGCcgGuGGCg -3'
miRNA:   3'- -UGa-GCGCGCGG--------UGCGUGU-CGuaC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 53885 0.71 0.395426
Target:  5'- -gUCGUGCgGCCGC-CGCGGCgcaaauaauuGUGGGCg -3'
miRNA:   3'- ugAGCGCG-CGGUGcGUGUCG----------UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 62225 0.71 0.403862
Target:  5'- cCUCGCGCGCCAacaGCACGuuuugaccaaacGCAguguccGGGUc -3'
miRNA:   3'- uGAGCGCGCGGUg--CGUGU------------CGUa-----CCCG- -5'
6840 5' -59.8 NC_001875.2 + 74315 0.71 0.412412
Target:  5'- ---gGCGCGCagGCGCcggACAGCAcGGGCg -3'
miRNA:   3'- ugagCGCGCGg-UGCG---UGUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 128689 0.71 0.412412
Target:  5'- uACUCGCcgcccgacgccGCGUC-CGCGCAGC--GGGCu -3'
miRNA:   3'- -UGAGCG-----------CGCGGuGCGUGUCGuaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 30426 0.71 0.412412
Target:  5'- aACUCGUGCaGCaaagcguccaACGCGCAGC-UGGcGCg -3'
miRNA:   3'- -UGAGCGCG-CGg---------UGCGUGUCGuACC-CG- -5'
6840 5' -59.8 NC_001875.2 + 42737 0.71 0.412412
Target:  5'- -gUCGCGCGCgGCGaCGC-GCAUGGugaGCg -3'
miRNA:   3'- ugAGCGCGCGgUGC-GUGuCGUACC---CG- -5'
6840 5' -59.8 NC_001875.2 + 86138 0.71 0.421072
Target:  5'- gGCagUGCGCGgCGCGCGCGGCgagaugacggacGUGGuGCg -3'
miRNA:   3'- -UGa-GCGCGCgGUGCGUGUCG------------UACC-CG- -5'
6840 5' -59.8 NC_001875.2 + 39241 0.71 0.4272
Target:  5'- cAUUCGCGCGCgCAUGCugGagaaacugcgcgacGCG-GGGCg -3'
miRNA:   3'- -UGAGCGCGCG-GUGCGugU--------------CGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 36656 0.71 0.429842
Target:  5'- gGC-CGCGuCGUgCGCGCugAGCucgGGGCg -3'
miRNA:   3'- -UGaGCGC-GCG-GUGCGugUCGua-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 41442 0.71 0.429842
Target:  5'- cGCUgCGCGCGCaCAgGCGCcGguUGcGGCg -3'
miRNA:   3'- -UGA-GCGCGCG-GUgCGUGuCguAC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 94285 0.7 0.437825
Target:  5'- cACUCGa-UGCCGCGUuucuggugcuccaGCAGguUGGGCg -3'
miRNA:   3'- -UGAGCgcGCGGUGCG-------------UGUCguACCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.