miRNA display CGI


Results 61 - 80 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 33480 0.7 0.438717
Target:  5'- -gUgGCGCGCCGCGCGCug---GGGUg -3'
miRNA:   3'- ugAgCGCGCGGUGCGUGucguaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 114019 0.7 0.447697
Target:  5'- cCUCGCGCauggcgGCCGCGCGguccagauggUAGCAcgcGGGCu -3'
miRNA:   3'- uGAGCGCG------CGGUGCGU----------GUCGUa--CCCG- -5'
6840 5' -59.8 NC_001875.2 + 97740 0.7 0.447697
Target:  5'- aGCgCGCGCGCuCGUGCAacccCGGCAcGGGCg -3'
miRNA:   3'- -UGaGCGCGCG-GUGCGU----GUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 89152 0.7 0.447697
Target:  5'- aAC-CGCGCGCCGCGCgguuucguGCAcGC-UGGcGCa -3'
miRNA:   3'- -UGaGCGCGCGGUGCG--------UGU-CGuACC-CG- -5'
6840 5' -59.8 NC_001875.2 + 28633 0.7 0.447697
Target:  5'- gGCgucaGCGUGCCcgugucguggaACGUguggaacgGCGGCGUGGGCg -3'
miRNA:   3'- -UGag--CGCGCGG-----------UGCG--------UGUCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 58338 0.7 0.451317
Target:  5'- gACUCGUGCGUCACGUACAGgucgcCAUGcucgucggacgcgucGGUg -3'
miRNA:   3'- -UGAGCGCGCGGUGCGUGUC-----GUAC---------------CCG- -5'
6840 5' -59.8 NC_001875.2 + 93277 0.7 0.456778
Target:  5'- gUUUGCGgGCgGC-CACGGguUGGGCa -3'
miRNA:   3'- uGAGCGCgCGgUGcGUGUCguACCCG- -5'
6840 5' -59.8 NC_001875.2 + 13371 0.7 0.456778
Target:  5'- aGCUgGUGCGCaccguuucUACGCACGGCAccaGGCg -3'
miRNA:   3'- -UGAgCGCGCG--------GUGCGUGUCGUac-CCG- -5'
6840 5' -59.8 NC_001875.2 + 11182 0.7 0.456778
Target:  5'- ---aGCGCGCCGuCGUuuucagugaACAGgAUGGGCu -3'
miRNA:   3'- ugagCGCGCGGU-GCG---------UGUCgUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 88905 0.7 0.460437
Target:  5'- uGCUgaCGCaCGCCACGUuugacugcgacgcccACGGCAUGcGGCu -3'
miRNA:   3'- -UGA--GCGcGCGGUGCG---------------UGUCGUAC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 3070 0.7 0.460437
Target:  5'- aGCg-GCGCGCCGgggucgcccacggcgUGCACGcGCcgGGGCg -3'
miRNA:   3'- -UGagCGCGCGGU---------------GCGUGU-CGuaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 29758 0.7 0.465034
Target:  5'- aACUCaucguggGCGuCGCCAUGUACGGCcgcGGGUg -3'
miRNA:   3'- -UGAG-------CGC-GCGGUGCGUGUCGua-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 14417 0.7 0.465956
Target:  5'- --aUGgGCGCCAC---CGGCAUGGGCg -3'
miRNA:   3'- ugaGCgCGCGGUGcguGUCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 39234 0.7 0.465956
Target:  5'- cGCUCGCGC-CCACcacucuGCACAGC---GGCa -3'
miRNA:   3'- -UGAGCGCGcGGUG------CGUGUCGuacCCG- -5'
6840 5' -59.8 NC_001875.2 + 122199 0.7 0.47523
Target:  5'- aGCUCGCGaaaCACGCACGGCGcGcGCa -3'
miRNA:   3'- -UGAGCGCgcgGUGCGUGUCGUaCcCG- -5'
6840 5' -59.8 NC_001875.2 + 114951 0.7 0.47523
Target:  5'- -aUCGCgGCGCCGCuGCGCGuacGCAUacaaccagGGGCg -3'
miRNA:   3'- ugAGCG-CGCGGUG-CGUGU---CGUA--------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 65224 0.7 0.47523
Target:  5'- uGCUCaaGCGCGCCACGCugcccgacaACAuGCAaGaGGCc -3'
miRNA:   3'- -UGAG--CGCGCGGUGCG---------UGU-CGUaC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 9953 0.7 0.47523
Target:  5'- --cUGCGCGUCgACG-ACAGCGUGGuGCa -3'
miRNA:   3'- ugaGCGCGCGG-UGCgUGUCGUACC-CG- -5'
6840 5' -59.8 NC_001875.2 + 81344 0.7 0.484594
Target:  5'- cGCggCGCGCugguGCCGCGCGCAcGCGccGGCc -3'
miRNA:   3'- -UGa-GCGCG----CGGUGCGUGU-CGUacCCG- -5'
6840 5' -59.8 NC_001875.2 + 52353 0.7 0.484594
Target:  5'- uGCggCGCGUGCCGCGC-CAGCGUccaaGaGCg -3'
miRNA:   3'- -UGa-GCGCGCGGUGCGuGUCGUAc---C-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.