miRNA display CGI


Results 81 - 100 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 225 0.69 0.494046
Target:  5'- -gUCGCGCGCCaucaaauuGCGCACGuuuuucagcGCGgcgGGGUc -3'
miRNA:   3'- ugAGCGCGCGG--------UGCGUGU---------CGUa--CCCG- -5'
6840 5' -59.8 NC_001875.2 + 121438 0.69 0.494046
Target:  5'- uGCagCGgGUGCCGCGcCACGGCGcgGcGGCg -3'
miRNA:   3'- -UGa-GCgCGCGGUGC-GUGUCGUa-C-CCG- -5'
6840 5' -59.8 NC_001875.2 + 93249 0.69 0.494046
Target:  5'- cCUCGaCGCGCagCugGCccguguagaGCAGgAUGGGCa -3'
miRNA:   3'- uGAGC-GCGCG--GugCG---------UGUCgUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 42164 0.69 0.494046
Target:  5'- -gUCGCGCGgUcaaacguaaacgACGCGCGGU-UGGGCg -3'
miRNA:   3'- ugAGCGCGCgG------------UGCGUGUCGuACCCG- -5'
6840 5' -59.8 NC_001875.2 + 54457 0.69 0.494046
Target:  5'- aGC-CGCgGCGCC--GCACAGCGUGugcGGCa -3'
miRNA:   3'- -UGaGCG-CGCGGugCGUGUCGUAC---CCG- -5'
6840 5' -59.8 NC_001875.2 + 35000 0.69 0.49785
Target:  5'- --gCGCGCGCCgucaaacaaggcGCGCauaacguccagcuugACGGCGcUGGGCa -3'
miRNA:   3'- ugaGCGCGCGG------------UGCG---------------UGUCGU-ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 32908 0.69 0.503581
Target:  5'- cACgCGCGCGUCGCGCACGcGCAaccGCg -3'
miRNA:   3'- -UGaGCGCGCGGUGCGUGU-CGUaccCG- -5'
6840 5' -59.8 NC_001875.2 + 91627 0.69 0.503581
Target:  5'- aAUUUGCuGCGCCGaauagcCGCGCAGCAgcuGGCc -3'
miRNA:   3'- -UGAGCG-CGCGGU------GCGUGUCGUac-CCG- -5'
6840 5' -59.8 NC_001875.2 + 36094 0.69 0.503581
Target:  5'- cGCUCGCGCGgCAgCaCGCGGCGgcGGCg -3'
miRNA:   3'- -UGAGCGCGCgGU-GcGUGUCGUacCCG- -5'
6840 5' -59.8 NC_001875.2 + 9136 0.69 0.503581
Target:  5'- gACUCGCGCGCCA-GUuCGGUGUccacGGCg -3'
miRNA:   3'- -UGAGCGCGCGGUgCGuGUCGUAc---CCG- -5'
6840 5' -59.8 NC_001875.2 + 43982 0.69 0.503581
Target:  5'- -gUCGCcgacCGCCACGgACAGCccgacGGGCg -3'
miRNA:   3'- ugAGCGc---GCGGUGCgUGUCGua---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 50844 0.69 0.503581
Target:  5'- cGCgUCGCGCGCCuuuuucaGCAgCAGCuuuugcucGGGCg -3'
miRNA:   3'- -UG-AGCGCGCGGug-----CGU-GUCGua------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 71941 0.69 0.513195
Target:  5'- gAC-CGCGCGCUccGCGCGCAGCcUGucGCc -3'
miRNA:   3'- -UGaGCGCGCGG--UGCGUGUCGuACc-CG- -5'
6840 5' -59.8 NC_001875.2 + 37112 0.69 0.513195
Target:  5'- uGCgggCGCgGCGCCGCGC-CGGCGUuuGCg -3'
miRNA:   3'- -UGa--GCG-CGCGGUGCGuGUCGUAccCG- -5'
6840 5' -59.8 NC_001875.2 + 120772 0.69 0.513195
Target:  5'- --gCGCGCGCCACGCcaaacugcuGCAGUuUGcGCg -3'
miRNA:   3'- ugaGCGCGCGGUGCG---------UGUCGuACcCG- -5'
6840 5' -59.8 NC_001875.2 + 65765 0.69 0.513195
Target:  5'- uAUUCGUGCGCgGCGgGCGGC---GGCg -3'
miRNA:   3'- -UGAGCGCGCGgUGCgUGUCGuacCCG- -5'
6840 5' -59.8 NC_001875.2 + 66291 0.69 0.517062
Target:  5'- cGCUC-UGCGUCAaaUGCGCggccggcgaguugauGGCGUGGGCg -3'
miRNA:   3'- -UGAGcGCGCGGU--GCGUG---------------UCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 69066 0.69 0.517062
Target:  5'- gACUUGCGUGCaaACGCACcccugcgcguucaacGGCGcGGGCc -3'
miRNA:   3'- -UGAGCGCGCGg-UGCGUG---------------UCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 128737 0.69 0.522883
Target:  5'- uCUgCGCGCgaGCCGCGCccCGGCgcgugcacgccGUGGGCg -3'
miRNA:   3'- uGA-GCGCG--CGGUGCGu-GUCG-----------UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 102164 0.69 0.522883
Target:  5'- aGCUCGUugGCGUuccaacugggCGCGUACAGCGUGGu- -3'
miRNA:   3'- -UGAGCG--CGCG----------GUGCGUGUCGUACCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.