miRNA display CGI


Results 101 - 120 of 250 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 128737 0.69 0.522883
Target:  5'- uCUgCGCGCgaGCCGCGCccCGGCgcgugcacgccGUGGGCg -3'
miRNA:   3'- uGA-GCGCG--CGGUGCGu-GUCG-----------UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 97515 0.69 0.522883
Target:  5'- uCUCGUGCGUUuCGUcuuCGGgGUGGGCg -3'
miRNA:   3'- uGAGCGCGCGGuGCGu--GUCgUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 97391 0.69 0.522883
Target:  5'- uUUUGCuGCG-CGCGCAUGGCGuugaUGGGCg -3'
miRNA:   3'- uGAGCG-CGCgGUGCGUGUCGU----ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 47681 0.69 0.522883
Target:  5'- cGCg-GCGCGCCGCGCGuuucuCAacGCG-GGGCa -3'
miRNA:   3'- -UGagCGCGCGGUGCGU-----GU--CGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 634 0.69 0.531663
Target:  5'- ---aGCGCGCCcuGCGUuuGCAGCGUcucaaacagguccGGGCa -3'
miRNA:   3'- ugagCGCGCGG--UGCG--UGUCGUA-------------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 89785 0.69 0.532642
Target:  5'- cGCUCGUGCaCgUGCGCgaacGCAGCGcGGGCg -3'
miRNA:   3'- -UGAGCGCGcG-GUGCG----UGUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 63133 0.69 0.532642
Target:  5'- gGCcgggCGCGCgGCCgGCGCACGGgucCAcGGGCa -3'
miRNA:   3'- -UGa---GCGCG-CGG-UGCGUGUC---GUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 65775 0.69 0.532642
Target:  5'- gGCUgG-GCGagcaCGCGCGCGGCGUcGGCg -3'
miRNA:   3'- -UGAgCgCGCg---GUGCGUGUCGUAcCCG- -5'
6840 5' -59.8 NC_001875.2 + 44402 0.69 0.532642
Target:  5'- -gUCG-GCGCgCGCGCACuGCAaguuggugGGGCg -3'
miRNA:   3'- ugAGCgCGCG-GUGCGUGuCGUa-------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 40432 0.69 0.541479
Target:  5'- gGCUgaCGCGCGCCaucgagaACGUggGCAGCcccgaGGGCg -3'
miRNA:   3'- -UGA--GCGCGCGG-------UGCG--UGUCGua---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 99796 0.69 0.542464
Target:  5'- --aCGCGCGCgCACGCuCAuGUuuAUGGGUa -3'
miRNA:   3'- ugaGCGCGCG-GUGCGuGU-CG--UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 18430 0.69 0.542464
Target:  5'- uACUCG-GCGCgAgGCGCGguccGCGUGGcGCg -3'
miRNA:   3'- -UGAGCgCGCGgUgCGUGU----CGUACC-CG- -5'
6840 5' -59.8 NC_001875.2 + 86367 0.69 0.542464
Target:  5'- gGCaC-CGCGCUagACGCGCGGCugcGGGCg -3'
miRNA:   3'- -UGaGcGCGCGG--UGCGUGUCGua-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 79670 0.69 0.542464
Target:  5'- -aUCGCGgGUCGcCGUACAGCA--GGCa -3'
miRNA:   3'- ugAGCGCgCGGU-GCGUGUCGUacCCG- -5'
6840 5' -59.8 NC_001875.2 + 70234 0.69 0.542464
Target:  5'- uCUCGCcaaGCCAgCGCGCGGUgaucGGGCg -3'
miRNA:   3'- uGAGCGcg-CGGU-GCGUGUCGua--CCCG- -5'
6840 5' -59.8 NC_001875.2 + 89904 0.69 0.542464
Target:  5'- --aCGUgGCGCCGCGCAUAuaAaGGGCg -3'
miRNA:   3'- ugaGCG-CGCGGUGCGUGUcgUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 85821 0.68 0.552346
Target:  5'- --cCGCgGCGCCA-GCu--GCGUGGGCg -3'
miRNA:   3'- ugaGCG-CGCGGUgCGuguCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 39866 0.68 0.552346
Target:  5'- --gCGUGCGCUACa-ACAGCccGGGCg -3'
miRNA:   3'- ugaGCGCGCGGUGcgUGUCGuaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 64773 0.68 0.562282
Target:  5'- uCUCGCGCGCCA-GCucCAGCGgcuuGGUu -3'
miRNA:   3'- uGAGCGCGCGGUgCGu-GUCGUac--CCG- -5'
6840 5' -59.8 NC_001875.2 + 98034 0.68 0.562282
Target:  5'- --cCGCGCGCCGUGCGCcGac-GGGCa -3'
miRNA:   3'- ugaGCGCGCGGUGCGUGuCguaCCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.