miRNA display CGI


Results 121 - 140 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 72254 0.68 0.562282
Target:  5'- uGCUCGCGCacgucgGCCACGCuGCAGCGc---- -3'
miRNA:   3'- -UGAGCGCG------CGGUGCG-UGUCGUacccg -5'
6840 5' -59.8 NC_001875.2 + 98034 0.68 0.562282
Target:  5'- --cCGCGCGCCGUGCGCcGac-GGGCa -3'
miRNA:   3'- ugaGCGCGCGGUGCGUGuCguaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 74076 0.68 0.562282
Target:  5'- --gUGCGCGCCccuCGCAaaaccuGCAguUGGGCa -3'
miRNA:   3'- ugaGCGCGCGGu--GCGUgu----CGU--ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 94657 0.68 0.562282
Target:  5'- cCUCGaacaugaaaUGgGCCAgCGCGCGGCAcGGGUg -3'
miRNA:   3'- uGAGC---------GCgCGGU-GCGUGUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 5775 0.68 0.562282
Target:  5'- gUUCaGCGCGuCCugGUACGGCAUuugccGGCu -3'
miRNA:   3'- uGAG-CGCGC-GGugCGUGUCGUAc----CCG- -5'
6840 5' -59.8 NC_001875.2 + 112731 0.68 0.572265
Target:  5'- ---gGCGCGUCgcGCGCACAGCAacacGGCc -3'
miRNA:   3'- ugagCGCGCGG--UGCGUGUCGUac--CCG- -5'
6840 5' -59.8 NC_001875.2 + 33804 0.68 0.572265
Target:  5'- cACUUGCcCGUCgGCGCACGGCGcgcgGGGg -3'
miRNA:   3'- -UGAGCGcGCGG-UGCGUGUCGUa---CCCg -5'
6840 5' -59.8 NC_001875.2 + 42209 0.68 0.572265
Target:  5'- ---aGCGCGCgGCgGCAC-GCGUGGuGCu -3'
miRNA:   3'- ugagCGCGCGgUG-CGUGuCGUACC-CG- -5'
6840 5' -59.8 NC_001875.2 + 29259 0.68 0.572265
Target:  5'- uGCgggUGCGCGgccgccgaCCGCGC-CGGCG-GGGCg -3'
miRNA:   3'- -UGa--GCGCGC--------GGUGCGuGUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 62991 0.68 0.578275
Target:  5'- cACUCGCGCaCCGCgugcgacccguccGCcaggcagcgcaaauACAGCGUGGGa -3'
miRNA:   3'- -UGAGCGCGcGGUG-------------CG--------------UGUCGUACCCg -5'
6840 5' -59.8 NC_001875.2 + 24193 0.68 0.581285
Target:  5'- uACUUGUuugcccaacugugGCGCUgaGCGCGCAGUAUGcguuGGCa -3'
miRNA:   3'- -UGAGCG-------------CGCGG--UGCGUGUCGUAC----CCG- -5'
6840 5' -59.8 NC_001875.2 + 39640 0.68 0.58229
Target:  5'- gGCgCGCaGCGaaCCGCGCGCgAGUuUGGGCc -3'
miRNA:   3'- -UGaGCG-CGC--GGUGCGUG-UCGuACCCG- -5'
6840 5' -59.8 NC_001875.2 + 32796 0.68 0.58229
Target:  5'- --nCGgGCGCCGCGC-CGGCAagcucGGCg -3'
miRNA:   3'- ugaGCgCGCGGUGCGuGUCGUac---CCG- -5'
6840 5' -59.8 NC_001875.2 + 77917 0.68 0.58229
Target:  5'- --gUGCGCGCCaACGCGCccGCAacGGCg -3'
miRNA:   3'- ugaGCGCGCGG-UGCGUGu-CGUacCCG- -5'
6840 5' -59.8 NC_001875.2 + 3861 0.68 0.589328
Target:  5'- gUUCGUGUGgCACG-GCAGCAccgcgccgccaagcUGGGCa -3'
miRNA:   3'- uGAGCGCGCgGUGCgUGUCGU--------------ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 97879 0.68 0.592349
Target:  5'- gGCU-GCGCGCCGCacggGCACguugcgGGCGUcGGCg -3'
miRNA:   3'- -UGAgCGCGCGGUG----CGUG------UCGUAcCCG- -5'
6840 5' -59.8 NC_001875.2 + 20885 0.68 0.592349
Target:  5'- aACUCGUgcuccugcaGCGCCAgcccguCGCAUuguucGUGUGGGCg -3'
miRNA:   3'- -UGAGCG---------CGCGGU------GCGUGu----CGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 69736 0.68 0.592349
Target:  5'- -aUCGUG-GCCACGCGCcccuGCGUGGuCa -3'
miRNA:   3'- ugAGCGCgCGGUGCGUGu---CGUACCcG- -5'
6840 5' -59.8 NC_001875.2 + 51607 0.68 0.592349
Target:  5'- aGCUUGUGCGaCCACugGCACuGUuucaaGGGCg -3'
miRNA:   3'- -UGAGCGCGC-GGUG--CGUGuCGua---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 46486 0.68 0.592349
Target:  5'- --aCGCGaaCGCCGC-CACGGCGUcGGCg -3'
miRNA:   3'- ugaGCGC--GCGGUGcGUGUCGUAcCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.