miRNA display CGI


Results 61 - 80 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 30572 0.67 0.663162
Target:  5'- uUUUGUGCuCCAUGCGCAGCAUGc-- -3'
miRNA:   3'- uGAGCGCGcGGUGCGUGUCGUACccg -5'
6840 5' -59.8 NC_001875.2 + 2659 0.67 0.663162
Target:  5'- uACUUGCgGCGCCG---GCGGCGccugGGGCa -3'
miRNA:   3'- -UGAGCG-CGCGGUgcgUGUCGUa---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 3775 0.67 0.663162
Target:  5'- uUUCGCGCGCaauguCGUcCAGU-UGGGCc -3'
miRNA:   3'- uGAGCGCGCGgu---GCGuGUCGuACCCG- -5'
6840 5' -59.8 NC_001875.2 + 69236 0.67 0.653056
Target:  5'- --aCGCGCGCUGUGCcgacuugcccgACGGCAcGGGCc -3'
miRNA:   3'- ugaGCGCGCGGUGCG-----------UGUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 68566 0.67 0.653056
Target:  5'- gGCg-GCG-GUCGCGCACcGCGUGGcGCc -3'
miRNA:   3'- -UGagCGCgCGGUGCGUGuCGUACC-CG- -5'
6840 5' -59.8 NC_001875.2 + 53537 0.67 0.653056
Target:  5'- -gUCGUGCGCUACcaGCGCGagccGCAaacGGGCu -3'
miRNA:   3'- ugAGCGCGCGGUG--CGUGU----CGUa--CCCG- -5'
6840 5' -59.8 NC_001875.2 + 62370 0.67 0.65002
Target:  5'- -gUCGCGCGCCAgggaggucgacaUGCugaguCGccgcggguuuuauuGCGUGGGCa -3'
miRNA:   3'- ugAGCGCGCGGU------------GCGu----GU--------------CGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 90630 0.67 0.642933
Target:  5'- -gUUGCGCGCCACaaauuGCucaAGCugguccccgucgGUGGGCg -3'
miRNA:   3'- ugAGCGCGCGGUG-----CGug-UCG------------UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 104961 0.67 0.642933
Target:  5'- uGCUCGUGUGCgGCggcgggcugguGCACGGCAUcaGCa -3'
miRNA:   3'- -UGAGCGCGCGgUG-----------CGUGUCGUAccCG- -5'
6840 5' -59.8 NC_001875.2 + 95707 0.67 0.642933
Target:  5'- gGCUCggGCGCGCUgaaACGCGaaguGCAUGagcGGCg -3'
miRNA:   3'- -UGAG--CGCGCGG---UGCGUgu--CGUAC---CCG- -5'
6840 5' -59.8 NC_001875.2 + 79491 0.67 0.642933
Target:  5'- cGCUgGCGCGgCACGCGCcGCAcuugaaauUGuGCa -3'
miRNA:   3'- -UGAgCGCGCgGUGCGUGuCGU--------ACcCG- -5'
6840 5' -59.8 NC_001875.2 + 63678 0.67 0.642933
Target:  5'- -aUCGUcuuGCGCgGCGCGCAGCGUucGCc -3'
miRNA:   3'- ugAGCG---CGCGgUGCGUGUCGUAccCG- -5'
6840 5' -59.8 NC_001875.2 + 108838 0.67 0.642933
Target:  5'- cACggUGCGCGCCcaaaACGCGCAGaucuugGcGGCg -3'
miRNA:   3'- -UGa-GCGCGCGG----UGCGUGUCgua---C-CCG- -5'
6840 5' -59.8 NC_001875.2 + 59626 0.67 0.642933
Target:  5'- gAUUgGCGgaCGCCGCGuCGCuGGCucGUGGGCu -3'
miRNA:   3'- -UGAgCGC--GCGGUGC-GUG-UCG--UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 89110 0.67 0.642933
Target:  5'- --gCGCGuCGCCGCGCGCGaCGaccGGGUg -3'
miRNA:   3'- ugaGCGC-GCGGUGCGUGUcGUa--CCCG- -5'
6840 5' -59.8 NC_001875.2 + 32569 0.67 0.642933
Target:  5'- gGCUgcaGCaGUGCCGCGCGCAccucgacuaGCcGUGGGUu -3'
miRNA:   3'- -UGAg--CG-CGCGGUGCGUGU---------CG-UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 19474 0.67 0.642933
Target:  5'- gGCUCGgGCG-CugGUGCuGGCGgcucGGGCa -3'
miRNA:   3'- -UGAGCgCGCgGugCGUG-UCGUa---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 58479 0.67 0.642933
Target:  5'- uACaaGCGCaCCAUaGCGCGGCAUuuggugGGGCa -3'
miRNA:   3'- -UGagCGCGcGGUG-CGUGUCGUA------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 128902 0.67 0.642933
Target:  5'- aGCaaGCGCGCCAgCGCGCGgugaauuuGCAcGaGGCg -3'
miRNA:   3'- -UGagCGCGCGGU-GCGUGU--------CGUaC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 66086 0.67 0.639895
Target:  5'- cGC-CGCGCacgaauacgccgagGCC-CGCGCGGC--GGGCg -3'
miRNA:   3'- -UGaGCGCG--------------CGGuGCGUGUCGuaCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.