miRNA display CGI


Results 81 - 100 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 102268 0.67 0.632802
Target:  5'- cGCUCGCGCGCguUGCAgaaugagcuccCgAGCAauUGGcGCg -3'
miRNA:   3'- -UGAGCGCGCGguGCGU-----------G-UCGU--ACC-CG- -5'
6840 5' -59.8 NC_001875.2 + 89931 0.67 0.632802
Target:  5'- cGCgucCGCGgGCCACuauuCGCgGGCAUGGcGCg -3'
miRNA:   3'- -UGa--GCGCgCGGUGc---GUG-UCGUACC-CG- -5'
6840 5' -59.8 NC_001875.2 + 69716 0.67 0.632802
Target:  5'- --aCGCGCGUCGCGCuaacguuugcACGGaaucGGGCg -3'
miRNA:   3'- ugaGCGCGCGGUGCG----------UGUCgua-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 82985 0.67 0.632802
Target:  5'- cCUCGCgGCGCCGCucgucGC-CGGC--GGGCu -3'
miRNA:   3'- uGAGCG-CGCGGUG-----CGuGUCGuaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 65807 0.67 0.632802
Target:  5'- aGCUUGaGCGgaauguacuCCACGCGCu-CGUGGGCg -3'
miRNA:   3'- -UGAGCgCGC---------GGUGCGUGucGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 2623 0.67 0.632802
Target:  5'- cGCUCGaaucCGUGCCaAUGUACAcgAUGGGCu -3'
miRNA:   3'- -UGAGC----GCGCGG-UGCGUGUcgUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 31703 0.67 0.630776
Target:  5'- cGCUUGCGCGCCGCcgGCGCAuuacuuucGGCg -3'
miRNA:   3'- -UGAGCGCGCGGUG--CGUGUcguac---CCG- -5'
6840 5' -59.8 NC_001875.2 + 62165 0.67 0.622671
Target:  5'- -aUCGCGCGCCAaaGCAgucaauggacuCGGCGgugagcGGGCu -3'
miRNA:   3'- ugAGCGCGCGGUg-CGU-----------GUCGUa-----CCCG- -5'
6840 5' -59.8 NC_001875.2 + 90131 0.67 0.622671
Target:  5'- cGCcgCGCaGCGCCGCGCAUAcGCccuGGCc -3'
miRNA:   3'- -UGa-GCG-CGCGGUGCGUGU-CGuacCCG- -5'
6840 5' -59.8 NC_001875.2 + 5882 0.67 0.622671
Target:  5'- cCUCGCcgauGCGCCGaaccauguaguCGUACAGCGccGGCa -3'
miRNA:   3'- uGAGCG----CGCGGU-----------GCGUGUCGUacCCG- -5'
6840 5' -59.8 NC_001875.2 + 37046 0.67 0.622671
Target:  5'- cACggCGCGUGCaCGCGCGCGGacgcGGCc -3'
miRNA:   3'- -UGa-GCGCGCG-GUGCGUGUCguacCCG- -5'
6840 5' -59.8 NC_001875.2 + 87813 0.67 0.622671
Target:  5'- --aCGCGaUGCCGgGCugcgguACAGCAcgcUGGGCa -3'
miRNA:   3'- ugaGCGC-GCGGUgCG------UGUCGU---ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 62461 0.67 0.622671
Target:  5'- --aCGUGCGUUucgguggacgGCGCGCAGC--GGGCg -3'
miRNA:   3'- ugaGCGCGCGG----------UGCGUGUCGuaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 46615 0.67 0.622671
Target:  5'- cGCUCGUcgacaugcgGCGCUAcCGCGCGGCGgcccgucGGCu -3'
miRNA:   3'- -UGAGCG---------CGCGGU-GCGUGUCGUac-----CCG- -5'
6840 5' -59.8 NC_001875.2 + 6749 0.67 0.622671
Target:  5'- --aCGCGCagcaacgauguGCCGCGCauucGCGGCGUguuucaGGGCa -3'
miRNA:   3'- ugaGCGCG-----------CGGUGCG----UGUCGUA------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 3136 0.67 0.622671
Target:  5'- gGCgaaGCcCGCUGCGCggacGCGGCGUcGGGCg -3'
miRNA:   3'- -UGag-CGcGCGGUGCG----UGUCGUA-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 77832 0.67 0.612547
Target:  5'- uACgCGCGCGCCgcaaggccguGCGCGacCAGC-UGcGGCa -3'
miRNA:   3'- -UGaGCGCGCGG----------UGCGU--GUCGuAC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 8478 0.67 0.612547
Target:  5'- -gUCGCGCggaaacaccacGCCGgGCGCcguccGUGUGGGCg -3'
miRNA:   3'- ugAGCGCG-----------CGGUgCGUGu----CGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 82708 0.67 0.612547
Target:  5'- ---aGCGcCGCCAguCGCGCAGgGgcacgGGGCa -3'
miRNA:   3'- ugagCGC-GCGGU--GCGUGUCgUa----CCCG- -5'
6840 5' -59.8 NC_001875.2 + 75956 0.67 0.612547
Target:  5'- gAC-CGCG-GCCAUcgGCACAGUcgagGGGCu -3'
miRNA:   3'- -UGaGCGCgCGGUG--CGUGUCGua--CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.