miRNA display CGI


Results 101 - 120 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 26216 0.67 0.612547
Target:  5'- uACUCgGCGaccaggGCCGCGUACcggGGCAUGGcgGCg -3'
miRNA:   3'- -UGAG-CGCg-----CGGUGCGUG---UCGUACC--CG- -5'
6840 5' -59.8 NC_001875.2 + 8478 0.67 0.612547
Target:  5'- -gUCGCGCggaaacaccacGCCGgGCGCcguccGUGUGGGCg -3'
miRNA:   3'- ugAGCGCG-----------CGGUgCGUGu----CGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 124973 0.67 0.609512
Target:  5'- gAC-CGCGuCGCCGCGCguccGCuuuacgugcaaguuGGCGUcGGGCa -3'
miRNA:   3'- -UGaGCGC-GCGGUGCG----UG--------------UCGUA-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 131537 0.67 0.609512
Target:  5'- aGCggaGCGCGgacgaggugcuggaCCugGC-CAGCAUGcGGCg -3'
miRNA:   3'- -UGag-CGCGC--------------GGugCGuGUCGUAC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 29094 0.68 0.606479
Target:  5'- cGCUCGUGCaaagGCCGCGCAgacuuuaaGGUcgcuauccacgacccGUGGGCc -3'
miRNA:   3'- -UGAGCGCG----CGGUGCGUg-------UCG---------------UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 32219 0.68 0.602438
Target:  5'- aACUUGCGCcacuugcagaacGCCaACGCGCAGaCAUaccGGCg -3'
miRNA:   3'- -UGAGCGCG------------CGG-UGCGUGUC-GUAc--CCG- -5'
6840 5' -59.8 NC_001875.2 + 125397 0.68 0.602438
Target:  5'- cAC-CGCGCGCUacuacgacgGCGCGCaaauGGUgaagAUGGGCu -3'
miRNA:   3'- -UGaGCGCGCGG---------UGCGUG----UCG----UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 33042 0.68 0.602438
Target:  5'- gGCgggCGcCGCGCCGCGCggAUAGCGUuccgcGcGGCu -3'
miRNA:   3'- -UGa--GC-GCGCGGUGCG--UGUCGUA-----C-CCG- -5'
6840 5' -59.8 NC_001875.2 + 18764 0.68 0.601427
Target:  5'- cGCUgaCGCGCGUCGCcaucaaaGC-CAGCucuguaGUGGGCa -3'
miRNA:   3'- -UGA--GCGCGCGGUG-------CGuGUCG------UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 50366 0.68 0.599409
Target:  5'- gGCcgCGCGCGCCAcugacCGCGgacCAGCGUGuacuuuuugcggacGGCg -3'
miRNA:   3'- -UGa-GCGCGCGGU-----GCGU---GUCGUAC--------------CCG- -5'
6840 5' -59.8 NC_001875.2 + 46486 0.68 0.592349
Target:  5'- --aCGCGaaCGCCGC-CACGGCGUcGGCg -3'
miRNA:   3'- ugaGCGC--GCGGUGcGUGUCGUAcCCG- -5'
6840 5' -59.8 NC_001875.2 + 20885 0.68 0.592349
Target:  5'- aACUCGUgcuccugcaGCGCCAgcccguCGCAUuguucGUGUGGGCg -3'
miRNA:   3'- -UGAGCG---------CGCGGU------GCGUGu----CGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 69736 0.68 0.592349
Target:  5'- -aUCGUG-GCCACGCGCcccuGCGUGGuCa -3'
miRNA:   3'- ugAGCGCgCGGUGCGUGu---CGUACCcG- -5'
6840 5' -59.8 NC_001875.2 + 51607 0.68 0.592349
Target:  5'- aGCUUGUGCGaCCACugGCACuGUuucaaGGGCg -3'
miRNA:   3'- -UGAGCGCGC-GGUG--CGUGuCGua---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 97879 0.68 0.592349
Target:  5'- gGCU-GCGCGCCGCacggGCACguugcgGGCGUcGGCg -3'
miRNA:   3'- -UGAgCGCGCGGUG----CGUG------UCGUAcCCG- -5'
6840 5' -59.8 NC_001875.2 + 3861 0.68 0.589328
Target:  5'- gUUCGUGUGgCACG-GCAGCAccgcgccgccaagcUGGGCa -3'
miRNA:   3'- uGAGCGCGCgGUGCgUGUCGU--------------ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 39640 0.68 0.58229
Target:  5'- gGCgCGCaGCGaaCCGCGCGCgAGUuUGGGCc -3'
miRNA:   3'- -UGaGCG-CGC--GGUGCGUG-UCGuACCCG- -5'
6840 5' -59.8 NC_001875.2 + 32796 0.68 0.58229
Target:  5'- --nCGgGCGCCGCGC-CGGCAagcucGGCg -3'
miRNA:   3'- ugaGCgCGCGGUGCGuGUCGUac---CCG- -5'
6840 5' -59.8 NC_001875.2 + 77917 0.68 0.58229
Target:  5'- --gUGCGCGCCaACGCGCccGCAacGGCg -3'
miRNA:   3'- ugaGCGCGCGG-UGCGUGu-CGUacCCG- -5'
6840 5' -59.8 NC_001875.2 + 24193 0.68 0.581285
Target:  5'- uACUUGUuugcccaacugugGCGCUgaGCGCGCAGUAUGcguuGGCa -3'
miRNA:   3'- -UGAGCG-------------CGCGG--UGCGUGUCGUAC----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.