miRNA display CGI


Results 41 - 60 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 21752 0.72 0.374031
Target:  5'- gGC-CGCGCGuggcggccuCCACGCGCAGCGUcucugcgcgcgacacGGGUu -3'
miRNA:   3'- -UGaGCGCGC---------GGUGCGUGUCGUA---------------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 23799 0.66 0.683292
Target:  5'- cGC-CGaCGUGUCGCucCGCGGCGUcGGGCg -3'
miRNA:   3'- -UGaGC-GCGCGGUGc-GUGUCGUA-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 23997 0.78 0.153993
Target:  5'- aACUCGCGCGCguCGCAaGGCGcaccGGGCg -3'
miRNA:   3'- -UGAGCGCGCGguGCGUgUCGUa---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 24193 0.68 0.581285
Target:  5'- uACUUGUuugcccaacugugGCGCUgaGCGCGCAGUAUGcguuGGCa -3'
miRNA:   3'- -UGAGCG-------------CGCGG--UGCGUGUCGUAC----CCG- -5'
6840 5' -59.8 NC_001875.2 + 25998 0.66 0.673243
Target:  5'- gACUCGUgguggccgucgGCGCCuggGCGguCAGCAUGcuguuGGCc -3'
miRNA:   3'- -UGAGCG-----------CGCGG---UGCguGUCGUAC-----CCG- -5'
6840 5' -59.8 NC_001875.2 + 26216 0.67 0.612547
Target:  5'- uACUCgGCGaccaggGCCGCGUACcggGGCAUGGcgGCg -3'
miRNA:   3'- -UGAG-CGCg-----CGGUGCGUG---UCGUACC--CG- -5'
6840 5' -59.8 NC_001875.2 + 28633 0.7 0.447697
Target:  5'- gGCgucaGCGUGCCcgugucguggaACGUguggaacgGCGGCGUGGGCg -3'
miRNA:   3'- -UGag--CGCGCGG-----------UGCG--------UGUCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 29094 0.68 0.606479
Target:  5'- cGCUCGUGCaaagGCCGCGCAgacuuuaaGGUcgcuauccacgacccGUGGGCc -3'
miRNA:   3'- -UGAGCGCG----CGGUGCGUg-------UCG---------------UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 29259 0.68 0.572265
Target:  5'- uGCgggUGCGCGgccgccgaCCGCGC-CGGCG-GGGCg -3'
miRNA:   3'- -UGa--GCGCGC--------GGUGCGuGUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 29758 0.7 0.465034
Target:  5'- aACUCaucguggGCGuCGCCAUGUACGGCcgcGGGUg -3'
miRNA:   3'- -UGAG-------CGC-GCGGUGCGUGUCGua-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 29798 0.66 0.722986
Target:  5'- gACUgUGCGgGCgCugGCGgcGCAUGGGUc -3'
miRNA:   3'- -UGA-GCGCgCG-GugCGUguCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 30202 0.66 0.714141
Target:  5'- --aCGUGUGCUACGCGuCAGCGgcgacccugcuuuucGGGUg -3'
miRNA:   3'- ugaGCGCGCGGUGCGU-GUCGUa--------------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 30426 0.71 0.412412
Target:  5'- aACUCGUGCaGCaaagcguccaACGCGCAGC-UGGcGCg -3'
miRNA:   3'- -UGAGCGCG-CGg---------UGCGUGUCGuACC-CG- -5'
6840 5' -59.8 NC_001875.2 + 30572 0.67 0.663162
Target:  5'- uUUUGUGCuCCAUGCGCAGCAUGc-- -3'
miRNA:   3'- uGAGCGCGcGGUGCGUGUCGUACccg -5'
6840 5' -59.8 NC_001875.2 + 30622 0.66 0.672236
Target:  5'- aACUgCGCGCaaccaaaGCCGuCGacaaACGGCAaguUGGGCg -3'
miRNA:   3'- -UGA-GCGCG-------CGGU-GCg---UGUCGU---ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 30855 0.67 0.663162
Target:  5'- cGC-CGCaaaCGCCGCgGCcuGCAGCGcGGGCg -3'
miRNA:   3'- -UGaGCGc--GCGGUG-CG--UGUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 31116 0.72 0.37081
Target:  5'- --aCGCGUGCCGCGCgccGCAGCAaUGuGCa -3'
miRNA:   3'- ugaGCGCGCGGUGCG---UGUCGU-ACcCG- -5'
6840 5' -59.8 NC_001875.2 + 31703 0.67 0.630776
Target:  5'- cGCUUGCGCGCCGCcgGCGCAuuacuuucGGCg -3'
miRNA:   3'- -UGAGCGCGCGGUG--CGUGUcguac---CCG- -5'
6840 5' -59.8 NC_001875.2 + 32092 0.73 0.310438
Target:  5'- gGCUUGCGCGUCACaGCACgAGCAcgacaaGGCg -3'
miRNA:   3'- -UGAGCGCGCGGUG-CGUG-UCGUac----CCG- -5'
6840 5' -59.8 NC_001875.2 + 32219 0.68 0.602438
Target:  5'- aACUUGCGCcacuugcagaacGCCaACGCGCAGaCAUaccGGCg -3'
miRNA:   3'- -UGAGCGCG------------CGG-UGCGUGUC-GUAc--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.