miRNA display CGI


Results 61 - 80 of 250 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 32569 0.67 0.642933
Target:  5'- gGCUgcaGCaGUGCCGCGCGCAccucgacuaGCcGUGGGUu -3'
miRNA:   3'- -UGAg--CG-CGCGGUGCGUGU---------CG-UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 32769 0.83 0.070577
Target:  5'- cCUCgaGCGCGuCCuCGCGCGGCGUGGGCg -3'
miRNA:   3'- uGAG--CGCGC-GGuGCGUGUCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 32796 0.68 0.58229
Target:  5'- --nCGgGCGCCGCGC-CGGCAagcucGGCg -3'
miRNA:   3'- ugaGCgCGCGGUGCGuGUCGUac---CCG- -5'
6840 5' -59.8 NC_001875.2 + 32908 0.69 0.503581
Target:  5'- cACgCGCGCGUCGCGCACGcGCAaccGCg -3'
miRNA:   3'- -UGaGCGCGCGGUGCGUGU-CGUaccCG- -5'
6840 5' -59.8 NC_001875.2 + 33042 0.68 0.602438
Target:  5'- gGCgggCGcCGCGCCGCGCggAUAGCGUuccgcGcGGCu -3'
miRNA:   3'- -UGa--GC-GCGCGGUGCG--UGUCGUA-----C-CCG- -5'
6840 5' -59.8 NC_001875.2 + 33480 0.7 0.438717
Target:  5'- -gUgGCGCGCCGCGCGCug---GGGUg -3'
miRNA:   3'- ugAgCGCGCGGUGCGUGucguaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 33804 0.68 0.572265
Target:  5'- cACUUGCcCGUCgGCGCACGGCGcgcgGGGg -3'
miRNA:   3'- -UGAGCGcGCGG-UGCGUGUCGUa---CCCg -5'
6840 5' -59.8 NC_001875.2 + 33858 0.66 0.703256
Target:  5'- -gUCGCGCaCCGUGCGCGGCc--GGCa -3'
miRNA:   3'- ugAGCGCGcGGUGCGUGUCGuacCCG- -5'
6840 5' -59.8 NC_001875.2 + 35000 0.69 0.49785
Target:  5'- --gCGCGCGCCgucaaacaaggcGCGCauaacguccagcuugACGGCGcUGGGCa -3'
miRNA:   3'- ugaGCGCGCGG------------UGCG---------------UGUCGU-ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 35813 1.11 0.000716
Target:  5'- aACUCGCGCGCCACGCACAGCAUGGGCg -3'
miRNA:   3'- -UGAGCGCGCGGUGCGUGUCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 36094 0.69 0.503581
Target:  5'- cGCUCGCGCGgCAgCaCGCGGCGgcGGCg -3'
miRNA:   3'- -UGAGCGCGCgGU-GcGUGUCGUacCCG- -5'
6840 5' -59.8 NC_001875.2 + 36656 0.71 0.429842
Target:  5'- gGC-CGCGuCGUgCGCGCugAGCucgGGGCg -3'
miRNA:   3'- -UGaGCGC-GCG-GUGCGugUCGua-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 36703 0.66 0.703256
Target:  5'- --aCGCcaaCGUCAacaGCaACGGCGUGGGCu -3'
miRNA:   3'- ugaGCGc--GCGGUg--CG-UGUCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 37046 0.67 0.622671
Target:  5'- cACggCGCGUGCaCGCGCGCGGacgcGGCc -3'
miRNA:   3'- -UGa-GCGCGCG-GUGCGUGUCguacCCG- -5'
6840 5' -59.8 NC_001875.2 + 37112 0.69 0.513195
Target:  5'- uGCgggCGCgGCGCCGCGC-CGGCGUuuGCg -3'
miRNA:   3'- -UGa--GCG-CGCGGUGCGuGUCGUAccCG- -5'
6840 5' -59.8 NC_001875.2 + 37878 0.67 0.663162
Target:  5'- aACg-GCGgGCCGCGC-CAGCGgcuugcUGGcGCg -3'
miRNA:   3'- -UGagCGCgCGGUGCGuGUCGU------ACC-CG- -5'
6840 5' -59.8 NC_001875.2 + 38661 0.66 0.697289
Target:  5'- uAC-CGCGUGCUGCucauguccaucaaguGCgGCGGCGUGGGg -3'
miRNA:   3'- -UGaGCGCGCGGUG---------------CG-UGUCGUACCCg -5'
6840 5' -59.8 NC_001875.2 + 39234 0.7 0.465956
Target:  5'- cGCUCGCGC-CCACcacucuGCACAGC---GGCa -3'
miRNA:   3'- -UGAGCGCGcGGUG------CGUGUCGuacCCG- -5'
6840 5' -59.8 NC_001875.2 + 39241 0.71 0.4272
Target:  5'- cAUUCGCGCGCgCAUGCugGagaaacugcgcgacGCG-GGGCg -3'
miRNA:   3'- -UGAGCGCGCG-GUGCGugU--------------CGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 39328 0.66 0.673243
Target:  5'- gGCgugCGCGCGCUGCagGCGCAGCcUGacGCu -3'
miRNA:   3'- -UGa--GCGCGCGGUG--CGUGUCGuACc-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.