miRNA display CGI


Results 81 - 100 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 39640 0.68 0.58229
Target:  5'- gGCgCGCaGCGaaCCGCGCGCgAGUuUGGGCc -3'
miRNA:   3'- -UGaGCG-CGC--GGUGCGUG-UCGuACCCG- -5'
6840 5' -59.8 NC_001875.2 + 39866 0.68 0.552346
Target:  5'- --gCGUGCGCUACa-ACAGCccGGGCg -3'
miRNA:   3'- ugaGCGCGCGGUGcgUGUCGuaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 40432 0.69 0.541479
Target:  5'- gGCUgaCGCGCGCCaucgagaACGUggGCAGCcccgaGGGCg -3'
miRNA:   3'- -UGA--GCGCGCGG-------UGCG--UGUCGua---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 41442 0.71 0.429842
Target:  5'- cGCUgCGCGCGCaCAgGCGCcGguUGcGGCg -3'
miRNA:   3'- -UGA-GCGCGCG-GUgCGUGuCguAC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 41810 0.66 0.722986
Target:  5'- gGCaCGCGCGCCgGCGCcGCGGCcaguUGcGCg -3'
miRNA:   3'- -UGaGCGCGCGG-UGCG-UGUCGu---ACcCG- -5'
6840 5' -59.8 NC_001875.2 + 42164 0.69 0.494046
Target:  5'- -gUCGCGCGgUcaaacguaaacgACGCGCGGU-UGGGCg -3'
miRNA:   3'- ugAGCGCGCgG------------UGCGUGUCGuACCCG- -5'
6840 5' -59.8 NC_001875.2 + 42209 0.68 0.572265
Target:  5'- ---aGCGCGCgGCgGCAC-GCGUGGuGCu -3'
miRNA:   3'- ugagCGCGCGgUG-CGUGuCGUACC-CG- -5'
6840 5' -59.8 NC_001875.2 + 42588 0.72 0.37081
Target:  5'- cACgCGCGCGUCA-GCuCGGCGcUGGGCa -3'
miRNA:   3'- -UGaGCGCGCGGUgCGuGUCGU-ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 42737 0.71 0.412412
Target:  5'- -gUCGCGCGCgGCGaCGC-GCAUGGugaGCg -3'
miRNA:   3'- ugAGCGCGCGgUGC-GUGuCGUACC---CG- -5'
6840 5' -59.8 NC_001875.2 + 43027 0.72 0.378898
Target:  5'- uGC-CGCGCGCCGCgGCGC-GC--GGGCu -3'
miRNA:   3'- -UGaGCGCGCGGUG-CGUGuCGuaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 43858 0.66 0.722986
Target:  5'- uGCgCGgGCGUCGCGUAC-GC--GGGCg -3'
miRNA:   3'- -UGaGCgCGCGGUGCGUGuCGuaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 43982 0.69 0.503581
Target:  5'- -gUCGCcgacCGCCACGgACAGCccgacGGGCg -3'
miRNA:   3'- ugAGCGc---GCGGUGCgUGUCGua---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 44402 0.69 0.532642
Target:  5'- -gUCG-GCGCgCGCGCACuGCAaguuggugGGGCg -3'
miRNA:   3'- ugAGCgCGCG-GUGCGUGuCGUa-------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 45462 0.66 0.683292
Target:  5'- cGCUCgGCGCccgcaGCCGCGCGucUAGCGcGGuGCc -3'
miRNA:   3'- -UGAG-CGCG-----CGGUGCGU--GUCGUaCC-CG- -5'
6840 5' -59.8 NC_001875.2 + 45705 0.76 0.212762
Target:  5'- cGCcgCGCGCGCCGCGCACuGCcgauGGCc -3'
miRNA:   3'- -UGa-GCGCGCGGUGCGUGuCGuac-CCG- -5'
6840 5' -59.8 NC_001875.2 + 46486 0.68 0.592349
Target:  5'- --aCGCGaaCGCCGC-CACGGCGUcGGCg -3'
miRNA:   3'- ugaGCGC--GCGGUGcGUGUCGUAcCCG- -5'
6840 5' -59.8 NC_001875.2 + 46615 0.67 0.622671
Target:  5'- cGCUCGUcgacaugcgGCGCUAcCGCGCGGCGgcccgucGGCu -3'
miRNA:   3'- -UGAGCG---------CGCGGU-GCGUGUCGUac-----CCG- -5'
6840 5' -59.8 NC_001875.2 + 47681 0.69 0.522883
Target:  5'- cGCg-GCGCGCCGCGCGuuucuCAacGCG-GGGCa -3'
miRNA:   3'- -UGagCGCGCGGUGCGU-----GU--CGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 48374 0.66 0.703256
Target:  5'- -aUCGCGCGCCcgucCGaCGCGGCGacaGGuGCc -3'
miRNA:   3'- ugAGCGCGCGGu---GC-GUGUCGUa--CC-CG- -5'
6840 5' -59.8 NC_001875.2 + 48739 0.71 0.390419
Target:  5'- --gCGCGgGCCA-GCACAGUagcacguacgacgugGUGGGCa -3'
miRNA:   3'- ugaGCGCgCGGUgCGUGUCG---------------UACCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.