miRNA display CGI


Results 101 - 120 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 49541 0.69 0.522883
Target:  5'- -aUUGCGCGCCGCGC-CA----GGGCg -3'
miRNA:   3'- ugAGCGCGCGGUGCGuGUcguaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 50140 0.66 0.683292
Target:  5'- cGCUCuuccaGCGCCugGCGCGccuucuGCAUGGccGCc -3'
miRNA:   3'- -UGAGcg---CGCGGugCGUGU------CGUACC--CG- -5'
6840 5' -59.8 NC_001875.2 + 50366 0.68 0.599409
Target:  5'- gGCcgCGCGCGCCAcugacCGCGgacCAGCGUGuacuuuuugcggacGGCg -3'
miRNA:   3'- -UGa-GCGCGCGGU-----GCGU---GUCGUAC--------------CCG- -5'
6840 5' -59.8 NC_001875.2 + 50844 0.69 0.503581
Target:  5'- cGCgUCGCGCGCCuuuuucaGCAgCAGCuuuugcucGGGCg -3'
miRNA:   3'- -UG-AGCGCGCGGug-----CGU-GUCGua------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 51607 0.68 0.592349
Target:  5'- aGCUUGUGCGaCCACugGCACuGUuucaaGGGCg -3'
miRNA:   3'- -UGAGCGCGC-GGUG--CGUGuCGua---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 51922 0.75 0.240083
Target:  5'- --aUGC-CGCCGCuGCACAGCGUGcGGCg -3'
miRNA:   3'- ugaGCGcGCGGUG-CGUGUCGUAC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 52353 0.7 0.484594
Target:  5'- uGCggCGCGUGCCGCGC-CAGCGUccaaGaGCg -3'
miRNA:   3'- -UGa-GCGCGCGGUGCGuGUCGUAc---C-CG- -5'
6840 5' -59.8 NC_001875.2 + 53537 0.67 0.653056
Target:  5'- -gUCGUGCGCUACcaGCGCGagccGCAaacGGGCu -3'
miRNA:   3'- ugAGCGCGCGGUG--CGUGU----CGUa--CCCG- -5'
6840 5' -59.8 NC_001875.2 + 53885 0.71 0.395426
Target:  5'- -gUCGUGCgGCCGC-CGCGGCgcaaauaauuGUGGGCg -3'
miRNA:   3'- ugAGCGCG-CGGUGcGUGUCG----------UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 54457 0.69 0.494046
Target:  5'- aGC-CGCgGCGCC--GCACAGCGUGugcGGCa -3'
miRNA:   3'- -UGaGCG-CGCGGugCGUGUCGUAC---CCG- -5'
6840 5' -59.8 NC_001875.2 + 54593 0.67 0.612547
Target:  5'- gGCggCGCGC-CCACgGCGCGGUAUcGGUg -3'
miRNA:   3'- -UGa-GCGCGcGGUG-CGUGUCGUAcCCG- -5'
6840 5' -59.8 NC_001875.2 + 57669 0.66 0.722986
Target:  5'- aGCUCGCaaaacGCGuCCAaGCugGCGGCGgcGGGCg -3'
miRNA:   3'- -UGAGCG-----CGC-GGUgCG--UGUCGUa-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 58338 0.7 0.451317
Target:  5'- gACUCGUGCGUCACGUACAGgucgcCAUGcucgucggacgcgucGGUg -3'
miRNA:   3'- -UGAGCGCGCGGUGCGUGUC-----GUAC---------------CCG- -5'
6840 5' -59.8 NC_001875.2 + 58479 0.67 0.642933
Target:  5'- uACaaGCGCaCCAUaGCGCGGCAUuuggugGGGCa -3'
miRNA:   3'- -UGagCGCGcGGUG-CGUGUCGUA------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 59626 0.67 0.642933
Target:  5'- gAUUgGCGgaCGCCGCGuCGCuGGCucGUGGGCu -3'
miRNA:   3'- -UGAgCGC--GCGGUGC-GUG-UCG--UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 59928 0.72 0.378898
Target:  5'- cGCUCGC-CGaCGCGCAC-GCccaGUGGGCg -3'
miRNA:   3'- -UGAGCGcGCgGUGCGUGuCG---UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 61598 0.71 0.392917
Target:  5'- gGCUCGgGCGCCggcgGCGCuucgggcugugucgGCGGCGccucGGGCg -3'
miRNA:   3'- -UGAGCgCGCGG----UGCG--------------UGUCGUa---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 62037 0.66 0.704249
Target:  5'- -aUCGCGCuGCUGCGCAagcucuacaaaacuaAGCAUGGauuuGCa -3'
miRNA:   3'- ugAGCGCG-CGGUGCGUg--------------UCGUACC----CG- -5'
6840 5' -59.8 NC_001875.2 + 62165 0.67 0.622671
Target:  5'- -aUCGCGCGCCAaaGCAgucaauggacuCGGCGgugagcGGGCu -3'
miRNA:   3'- ugAGCGCGCGGUg-CGU-----------GUCGUa-----CCCG- -5'
6840 5' -59.8 NC_001875.2 + 62225 0.71 0.403862
Target:  5'- cCUCGCGCGCCAacaGCACGuuuugaccaaacGCAguguccGGGUc -3'
miRNA:   3'- uGAGCGCGCGGUg--CGUGU------------CGUa-----CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.