miRNA display CGI


Results 121 - 140 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 62370 0.67 0.65002
Target:  5'- -gUCGCGCGCCAgggaggucgacaUGCugaguCGccgcggguuuuauuGCGUGGGCa -3'
miRNA:   3'- ugAGCGCGCGGU------------GCGu----GU--------------CGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 62461 0.67 0.622671
Target:  5'- --aCGUGCGUUucgguggacgGCGCGCAGC--GGGCg -3'
miRNA:   3'- ugaGCGCGCGG----------UGCGUGUCGuaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 62991 0.68 0.578275
Target:  5'- cACUCGCGCaCCGCgugcgacccguccGCcaggcagcgcaaauACAGCGUGGGa -3'
miRNA:   3'- -UGAGCGCGcGGUG-------------CG--------------UGUCGUACCCg -5'
6840 5' -59.8 NC_001875.2 + 63133 0.69 0.532642
Target:  5'- gGCcgggCGCGCgGCCgGCGCACGGgucCAcGGGCa -3'
miRNA:   3'- -UGa---GCGCG-CGG-UGCGUGUC---GUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 63678 0.67 0.642933
Target:  5'- -aUCGUcuuGCGCgGCGCGCAGCGUucGCc -3'
miRNA:   3'- ugAGCG---CGCGgUGCGUGUCGUAccCG- -5'
6840 5' -59.8 NC_001875.2 + 64773 0.68 0.562282
Target:  5'- uCUCGCGCGCCA-GCucCAGCGgcuuGGUu -3'
miRNA:   3'- uGAGCGCGCGGUgCGu-GUCGUac--CCG- -5'
6840 5' -59.8 NC_001875.2 + 65224 0.7 0.47523
Target:  5'- uGCUCaaGCGCGCCACGCugcccgacaACAuGCAaGaGGCc -3'
miRNA:   3'- -UGAG--CGCGCGGUGCG---------UGU-CGUaC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 65765 0.69 0.513195
Target:  5'- uAUUCGUGCGCgGCGgGCGGC---GGCg -3'
miRNA:   3'- -UGAGCGCGCGgUGCgUGUCGuacCCG- -5'
6840 5' -59.8 NC_001875.2 + 65775 0.69 0.532642
Target:  5'- gGCUgG-GCGagcaCGCGCGCGGCGUcGGCg -3'
miRNA:   3'- -UGAgCgCGCg---GUGCGUGUCGUAcCCG- -5'
6840 5' -59.8 NC_001875.2 + 65807 0.67 0.632802
Target:  5'- aGCUUGaGCGgaauguacuCCACGCGCu-CGUGGGCg -3'
miRNA:   3'- -UGAGCgCGC---------GGUGCGUGucGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 66054 0.66 0.700275
Target:  5'- cAC-CGCGCGCCgACGCcGCGcGCGUGcucgcccagccgccGGCu -3'
miRNA:   3'- -UGaGCGCGCGG-UGCG-UGU-CGUAC--------------CCG- -5'
6840 5' -59.8 NC_001875.2 + 66086 0.67 0.639895
Target:  5'- cGC-CGCGCacgaauacgccgagGCC-CGCGCGGC--GGGCg -3'
miRNA:   3'- -UGaGCGCG--------------CGGuGCGUGUCGuaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 66291 0.69 0.517062
Target:  5'- cGCUC-UGCGUCAaaUGCGCggccggcgaguugauGGCGUGGGCg -3'
miRNA:   3'- -UGAGcGCGCGGU--GCGUG---------------UCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 66890 0.74 0.279253
Target:  5'- aAUUCGCgGCGCCAucguguuuugcauaaUGCugGGCAcGGGCa -3'
miRNA:   3'- -UGAGCG-CGCGGU---------------GCGugUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 68566 0.67 0.653056
Target:  5'- gGCg-GCG-GUCGCGCACcGCGUGGcGCc -3'
miRNA:   3'- -UGagCGCgCGGUGCGUGuCGUACC-CG- -5'
6840 5' -59.8 NC_001875.2 + 69066 0.69 0.517062
Target:  5'- gACUUGCGUGCaaACGCACcccugcgcguucaacGGCGcGGGCc -3'
miRNA:   3'- -UGAGCGCGCGg-UGCGUG---------------UCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 69236 0.67 0.653056
Target:  5'- --aCGCGCGCUGUGCcgacuugcccgACGGCAcGGGCc -3'
miRNA:   3'- ugaGCGCGCGGUGCG-----------UGUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 69716 0.67 0.632802
Target:  5'- --aCGCGCGUCGCGCuaacguuugcACGGaaucGGGCg -3'
miRNA:   3'- ugaGCGCGCGGUGCG----------UGUCgua-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 69736 0.68 0.592349
Target:  5'- -aUCGUG-GCCACGCGCcccuGCGUGGuCa -3'
miRNA:   3'- ugAGCGCgCGGUGCGUGu---CGUACCcG- -5'
6840 5' -59.8 NC_001875.2 + 70234 0.69 0.542464
Target:  5'- uCUCGCcaaGCCAgCGCGCGGUgaucGGGCg -3'
miRNA:   3'- uGAGCGcg-CGGU-GCGUGUCGua--CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.