miRNA display CGI


Results 21 - 40 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 114951 0.7 0.47523
Target:  5'- -aUCGCgGCGCCGCuGCGCGuacGCAUacaaccagGGGCg -3'
miRNA:   3'- ugAGCG-CGCGGUG-CGUGU---CGUA--------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 114019 0.7 0.447697
Target:  5'- cCUCGCGCauggcgGCCGCGCGguccagauggUAGCAcgcGGGCu -3'
miRNA:   3'- uGAGCGCG------CGGUGCGU----------GUCGUa--CCCG- -5'
6840 5' -59.8 NC_001875.2 + 113562 0.74 0.27027
Target:  5'- aACggCGCG-GUCGCGCACGGCGcgccauUGGGCc -3'
miRNA:   3'- -UGa-GCGCgCGGUGCGUGUCGU------ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 113398 0.71 0.390419
Target:  5'- gAUUCGCGCGCCACGCggaccGCGccucgcgccgaguacGCAaUGGGa -3'
miRNA:   3'- -UGAGCGCGCGGUGCG-----UGU---------------CGU-ACCCg -5'
6840 5' -59.8 NC_001875.2 + 112731 0.68 0.572265
Target:  5'- ---gGCGCGUCgcGCGCACAGCAacacGGCc -3'
miRNA:   3'- ugagCGCGCGG--UGCGUGUCGUac--CCG- -5'
6840 5' -59.8 NC_001875.2 + 111200 0.74 0.283175
Target:  5'- gGCggCGCGCGCCguuuuuuguuGCuCACgGGCGUGGGCa -3'
miRNA:   3'- -UGa-GCGCGCGG----------UGcGUG-UCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 110830 0.72 0.339653
Target:  5'- cGCUgGUGCGCCGCGgACuGUAUuugucguacGGGCa -3'
miRNA:   3'- -UGAgCGCGCGGUGCgUGuCGUA---------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 110576 0.72 0.354991
Target:  5'- uGCUCGUagccGCGCCGCGCGCGcGCcUGGa- -3'
miRNA:   3'- -UGAGCG----CGCGGUGCGUGU-CGuACCcg -5'
6840 5' -59.8 NC_001875.2 + 110084 0.66 0.672236
Target:  5'- cGCUgCGCGUggaggccGCCACGCGCGGCcagaGCa -3'
miRNA:   3'- -UGA-GCGCG-------CGGUGCGUGUCGuaccCG- -5'
6840 5' -59.8 NC_001875.2 + 108838 0.67 0.642933
Target:  5'- cACggUGCGCGCCcaaaACGCGCAGaucuugGcGGCg -3'
miRNA:   3'- -UGa-GCGCGCGG----UGCGUGUCgua---C-CCG- -5'
6840 5' -59.8 NC_001875.2 + 107636 0.72 0.37081
Target:  5'- uACU-GCGCGCUcaGCGcCACAGU-UGGGCa -3'
miRNA:   3'- -UGAgCGCGCGG--UGC-GUGUCGuACCCG- -5'
6840 5' -59.8 NC_001875.2 + 104961 0.67 0.642933
Target:  5'- uGCUCGUGUGCgGCggcgggcugguGCACGGCAUcaGCa -3'
miRNA:   3'- -UGAGCGCGCGgUG-----------CGUGUCGUAccCG- -5'
6840 5' -59.8 NC_001875.2 + 104208 0.66 0.690302
Target:  5'- --aUGCGCGaaccacggccuaaaCCACGCGguGCuguugGUGGGCu -3'
miRNA:   3'- ugaGCGCGC--------------GGUGCGUguCG-----UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 102566 0.66 0.722986
Target:  5'- gAC-CGCGCcCCGCcgGCGCGGUcgGcGGCc -3'
miRNA:   3'- -UGaGCGCGcGGUG--CGUGUCGuaC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 102268 0.67 0.632802
Target:  5'- cGCUCGCGCGCguUGCAgaaugagcuccCgAGCAauUGGcGCg -3'
miRNA:   3'- -UGAGCGCGCGguGCGU-----------G-UCGU--ACC-CG- -5'
6840 5' -59.8 NC_001875.2 + 102164 0.69 0.522883
Target:  5'- aGCUCGUugGCGUuccaacugggCGCGUACAGCGUGGu- -3'
miRNA:   3'- -UGAGCG--CGCG----------GUGCGUGUCGUACCcg -5'
6840 5' -59.8 NC_001875.2 + 100873 0.71 0.395426
Target:  5'- aGCgCGagGCGCaGCGCGC-GCGUGGGCg -3'
miRNA:   3'- -UGaGCg-CGCGgUGCGUGuCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 100762 0.66 0.683292
Target:  5'- uUUUGCGCGgCGCuuGCACAGguUGagcGGCa -3'
miRNA:   3'- uGAGCGCGCgGUG--CGUGUCguAC---CCG- -5'
6840 5' -59.8 NC_001875.2 + 100696 0.71 0.387104
Target:  5'- gACUcCGCGCGCgGCGCGuuaAGCAUGcacauugcugcGGCg -3'
miRNA:   3'- -UGA-GCGCGCGgUGCGUg--UCGUAC-----------CCG- -5'
6840 5' -59.8 NC_001875.2 + 99796 0.69 0.542464
Target:  5'- --aCGCGCGCgCACGCuCAuGUuuAUGGGUa -3'
miRNA:   3'- ugaGCGCGCG-GUGCGuGU-CG--UACCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.