miRNA display CGI


Results 41 - 60 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 98597 0.72 0.362841
Target:  5'- aACUCGgaGCGCCGCGCcgaaACGGCGcccGGCg -3'
miRNA:   3'- -UGAGCg-CGCGGUGCG----UGUCGUac-CCG- -5'
6840 5' -59.8 NC_001875.2 + 98034 0.68 0.562282
Target:  5'- --cCGCGCGCCGUGCGCcGac-GGGCa -3'
miRNA:   3'- ugaGCGCGCGGUGCGUGuCguaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 97879 0.68 0.592349
Target:  5'- gGCU-GCGCGCCGCacggGCACguugcgGGCGUcGGCg -3'
miRNA:   3'- -UGAgCGCGCGGUG----CGUG------UCGUAcCCG- -5'
6840 5' -59.8 NC_001875.2 + 97740 0.7 0.447697
Target:  5'- aGCgCGCGCGCuCGUGCAacccCGGCAcGGGCg -3'
miRNA:   3'- -UGaGCGCGCG-GUGCGU----GUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 97515 0.69 0.522883
Target:  5'- uCUCGUGCGUUuCGUcuuCGGgGUGGGCg -3'
miRNA:   3'- uGAGCGCGCGGuGCGu--GUCgUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 97391 0.69 0.522883
Target:  5'- uUUUGCuGCG-CGCGCAUGGCGuugaUGGGCg -3'
miRNA:   3'- uGAGCG-CGCgGUGCGUGUCGU----ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 96448 0.75 0.251806
Target:  5'- cGCUcgCGCGCGCCACGgACAGCAgc-GCc -3'
miRNA:   3'- -UGA--GCGCGCGGUGCgUGUCGUaccCG- -5'
6840 5' -59.8 NC_001875.2 + 96204 0.72 0.378084
Target:  5'- cACUUGCGCugcGCCAgauagucCGCGuCGGCGUuGGGCg -3'
miRNA:   3'- -UGAGCGCG---CGGU-------GCGU-GUCGUA-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 95707 0.67 0.642933
Target:  5'- gGCUCggGCGCGCUgaaACGCGaaguGCAUGagcGGCg -3'
miRNA:   3'- -UGAG--CGCGCGG---UGCGUgu--CGUAC---CCG- -5'
6840 5' -59.8 NC_001875.2 + 95217 0.75 0.223355
Target:  5'- aGCUCGUGUGCCGCGaucgguGguGCAaGGGCg -3'
miRNA:   3'- -UGAGCGCGCGGUGCg-----UguCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 94769 0.66 0.683292
Target:  5'- -gUCGUcCGCCAaaCACAGCGUGGccGCg -3'
miRNA:   3'- ugAGCGcGCGGUgcGUGUCGUACC--CG- -5'
6840 5' -59.8 NC_001875.2 + 94657 0.68 0.562282
Target:  5'- cCUCGaacaugaaaUGgGCCAgCGCGCGGCAcGGGUg -3'
miRNA:   3'- uGAGC---------GCgCGGU-GCGUGUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 94476 0.66 0.713155
Target:  5'- aGCggCGCGCGCguuCGCACgAGCGcGcGGCc -3'
miRNA:   3'- -UGa-GCGCGCGgu-GCGUG-UCGUaC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 94285 0.7 0.437825
Target:  5'- cACUCGa-UGCCGCGUuucuggugcuccaGCAGguUGGGCg -3'
miRNA:   3'- -UGAGCgcGCGGUGCG-------------UGUCguACCCG- -5'
6840 5' -59.8 NC_001875.2 + 93277 0.7 0.456778
Target:  5'- gUUUGCGgGCgGC-CACGGguUGGGCa -3'
miRNA:   3'- uGAGCGCgCGgUGcGUGUCguACCCG- -5'
6840 5' -59.8 NC_001875.2 + 93249 0.69 0.494046
Target:  5'- cCUCGaCGCGCagCugGCccguguagaGCAGgAUGGGCa -3'
miRNA:   3'- uGAGC-GCGCG--GugCG---------UGUCgUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 92580 0.66 0.722006
Target:  5'- aGC-CGCcccGCGUCGCGCAguuucucCAGCAUGcGCg -3'
miRNA:   3'- -UGaGCG---CGCGGUGCGU-------GUCGUACcCG- -5'
6840 5' -59.8 NC_001875.2 + 92173 0.72 0.354991
Target:  5'- aGCUCGC-CGCCGCGCGCcGCc--GGCc -3'
miRNA:   3'- -UGAGCGcGCGGUGCGUGuCGuacCCG- -5'
6840 5' -59.8 NC_001875.2 + 91627 0.69 0.503581
Target:  5'- aAUUUGCuGCGCCGaauagcCGCGCAGCAgcuGGCc -3'
miRNA:   3'- -UGAGCG-CGCGGU------GCGUGUCGUac-CCG- -5'
6840 5' -59.8 NC_001875.2 + 91623 0.66 0.702263
Target:  5'- --aCGCGCGUUuCGC-CGGCGccaauuuccgugaUGGGCa -3'
miRNA:   3'- ugaGCGCGCGGuGCGuGUCGU-------------ACCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.