miRNA display CGI


Results 61 - 80 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 90670 0.72 0.347261
Target:  5'- cGCUgGCGCugggGCUGCGCACAGuCAacgaGGGCa -3'
miRNA:   3'- -UGAgCGCG----CGGUGCGUGUC-GUa---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 90630 0.67 0.642933
Target:  5'- -gUUGCGCGCCACaaauuGCucaAGCugguccccgucgGUGGGCg -3'
miRNA:   3'- ugAGCGCGCGGUG-----CGug-UCG------------UACCCG- -5'
6840 5' -59.8 NC_001875.2 + 90499 0.66 0.693299
Target:  5'- aACUgCGCGCGgcCCACuuGCACGGCGUacGCg -3'
miRNA:   3'- -UGA-GCGCGC--GGUG--CGUGUCGUAccCG- -5'
6840 5' -59.8 NC_001875.2 + 90384 0.66 0.712168
Target:  5'- cGCcgCGCGCGCCGCaaccggcgccuguGCGCGcGCAgcGGCc -3'
miRNA:   3'- -UGa-GCGCGCGGUG-------------CGUGU-CGUacCCG- -5'
6840 5' -59.8 NC_001875.2 + 90131 0.67 0.622671
Target:  5'- cGCcgCGCaGCGCCGCGCAUAcGCccuGGCc -3'
miRNA:   3'- -UGa-GCG-CGCGGUGCGUGU-CGuacCCG- -5'
6840 5' -59.8 NC_001875.2 + 90044 0.75 0.251806
Target:  5'- gGCgCGCGUGCCgGCGgaaauCACaAGCAUGGGCg -3'
miRNA:   3'- -UGaGCGCGCGG-UGC-----GUG-UCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 90036 0.66 0.670222
Target:  5'- cGC-CGCGCGCCAUGuUGCAGCAcuacaacgagugccUGGa- -3'
miRNA:   3'- -UGaGCGCGCGGUGC-GUGUCGU--------------ACCcg -5'
6840 5' -59.8 NC_001875.2 + 89995 0.75 0.223355
Target:  5'- aGCUCGC-CGCCGCgGCGCGGCAacUGGacGCg -3'
miRNA:   3'- -UGAGCGcGCGGUG-CGUGUCGU--ACC--CG- -5'
6840 5' -59.8 NC_001875.2 + 89931 0.67 0.632802
Target:  5'- cGCgucCGCGgGCCACuauuCGCgGGCAUGGcGCg -3'
miRNA:   3'- -UGa--GCGCgCGGUGc---GUG-UCGUACC-CG- -5'
6840 5' -59.8 NC_001875.2 + 89904 0.69 0.542464
Target:  5'- --aCGUgGCGCCGCGCAUAuaAaGGGCg -3'
miRNA:   3'- ugaGCG-CGCGGUGCGUGUcgUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 89785 0.69 0.532642
Target:  5'- cGCUCGUGCaCgUGCGCgaacGCAGCGcGGGCg -3'
miRNA:   3'- -UGAGCGCGcG-GUGCG----UGUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 89268 0.77 0.174625
Target:  5'- cGCgcgCGUGCGCCGaccugGCGCGGC-UGGGCg -3'
miRNA:   3'- -UGa--GCGCGCGGUg----CGUGUCGuACCCG- -5'
6840 5' -59.8 NC_001875.2 + 89152 0.7 0.447697
Target:  5'- aAC-CGCGCGCCGCGCgguuucguGCAcGC-UGGcGCa -3'
miRNA:   3'- -UGaGCGCGCGGUGCG--------UGU-CGuACC-CG- -5'
6840 5' -59.8 NC_001875.2 + 89110 0.67 0.642933
Target:  5'- --gCGCGuCGCCGCGCGCGaCGaccGGGUg -3'
miRNA:   3'- ugaGCGC-GCGGUGCGUGUcGUa--CCCG- -5'
6840 5' -59.8 NC_001875.2 + 89015 0.66 0.713155
Target:  5'- cGCUaCGCGUGCgaGCGCAaguugucauuCAGCGUgcccgugcgcGGGCu -3'
miRNA:   3'- -UGA-GCGCGCGg-UGCGU----------GUCGUA----------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 88905 0.7 0.460437
Target:  5'- uGCUgaCGCaCGCCACGUuugacugcgacgcccACGGCAUGcGGCu -3'
miRNA:   3'- -UGA--GCGcGCGGUGCG---------------UGUCGUAC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 87813 0.67 0.622671
Target:  5'- --aCGCGaUGCCGgGCugcgguACAGCAcgcUGGGCa -3'
miRNA:   3'- ugaGCGC-GCGGUgCG------UGUCGU---ACCCG- -5'
6840 5' -59.8 NC_001875.2 + 86367 0.69 0.542464
Target:  5'- gGCaC-CGCGCUagACGCGCGGCugcGGGCg -3'
miRNA:   3'- -UGaGcGCGCGG--UGCGUGUCGua-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 86138 0.71 0.421072
Target:  5'- gGCagUGCGCGgCGCGCGCGGCgagaugacggacGUGGuGCg -3'
miRNA:   3'- -UGa-GCGCGCgGUGCGUGUCG------------UACC-CG- -5'
6840 5' -59.8 NC_001875.2 + 86096 0.68 0.562282
Target:  5'- gGCUCG-GCGCCGCGUuuACGGCuucgcGUGGa- -3'
miRNA:   3'- -UGAGCgCGCGGUGCG--UGUCG-----UACCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.