miRNA display CGI


Results 81 - 100 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 85821 0.68 0.552346
Target:  5'- --cCGCgGCGCCA-GCu--GCGUGGGCg -3'
miRNA:   3'- ugaGCG-CGCGGUgCGuguCGUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 85700 0.74 0.263997
Target:  5'- aGCUUGCGCGCCGCgaucgacugguuGCcCAGCGUGGuCa -3'
miRNA:   3'- -UGAGCGCGCGGUG------------CGuGUCGUACCcG- -5'
6840 5' -59.8 NC_001875.2 + 85465 0.66 0.673243
Target:  5'- -gUCGC-UGCaCAUGCGCAGCAgcUGcGGCc -3'
miRNA:   3'- ugAGCGcGCG-GUGCGUGUCGU--AC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 85296 0.66 0.683292
Target:  5'- --gCGCGgGCgGCGCG-GGCGcGGGCa -3'
miRNA:   3'- ugaGCGCgCGgUGCGUgUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 84906 0.66 0.722986
Target:  5'- cCUUG-GCGUa--GCGCAGCAcgGGGCu -3'
miRNA:   3'- uGAGCgCGCGgugCGUGUCGUa-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 83798 0.66 0.693299
Target:  5'- --gCGCGCGCCcuCGUGCcu-GUGGGCg -3'
miRNA:   3'- ugaGCGCGCGGu-GCGUGucgUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 82985 0.67 0.632802
Target:  5'- cCUCGCgGCGCCGCucgucGC-CGGC--GGGCu -3'
miRNA:   3'- uGAGCG-CGCGGUG-----CGuGUCGuaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 82708 0.67 0.612547
Target:  5'- ---aGCGcCGCCAguCGCGCAGgGgcacgGGGCa -3'
miRNA:   3'- ugagCGC-GCGGU--GCGUGUCgUa----CCCG- -5'
6840 5' -59.8 NC_001875.2 + 82242 0.66 0.717096
Target:  5'- cGCUUGCGCGCuggugguagcgcucgUcgGCGCGCAGCugcuuGGCc -3'
miRNA:   3'- -UGAGCGCGCG---------------G--UGCGUGUCGuac--CCG- -5'
6840 5' -59.8 NC_001875.2 + 81344 0.7 0.484594
Target:  5'- cGCggCGCGCugguGCCGCGCGCAcGCGccGGCc -3'
miRNA:   3'- -UGa-GCGCG----CGGUGCGUGU-CGUacCCG- -5'
6840 5' -59.8 NC_001875.2 + 80638 0.72 0.378898
Target:  5'- cGCUCGacgggcgGCGCCAgaacCGCGCcGuCGUGGGCa -3'
miRNA:   3'- -UGAGCg------CGCGGU----GCGUGuC-GUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 79871 0.73 0.324801
Target:  5'- --gCGCGUGguCCACGCGCGcGCGUGcGGCa -3'
miRNA:   3'- ugaGCGCGC--GGUGCGUGU-CGUAC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 79670 0.69 0.542464
Target:  5'- -aUCGCGgGUCGcCGUACAGCA--GGCa -3'
miRNA:   3'- ugAGCGCgCGGU-GCGUGUCGUacCCG- -5'
6840 5' -59.8 NC_001875.2 + 79491 0.67 0.642933
Target:  5'- cGCUgGCGCGgCACGCGCcGCAcuugaaauUGuGCa -3'
miRNA:   3'- -UGAgCGCGCgGUGCGUGuCGU--------ACcCG- -5'
6840 5' -59.8 NC_001875.2 + 78471 0.66 0.673243
Target:  5'- cGCUCGCuGCGCCGCaGUuugaACAGguUGucGGUg -3'
miRNA:   3'- -UGAGCG-CGCGGUG-CG----UGUCguAC--CCG- -5'
6840 5' -59.8 NC_001875.2 + 77917 0.68 0.58229
Target:  5'- --gUGCGCGCCaACGCGCccGCAacGGCg -3'
miRNA:   3'- ugaGCGCGCGG-UGCGUGu-CGUacCCG- -5'
6840 5' -59.8 NC_001875.2 + 77832 0.67 0.612547
Target:  5'- uACgCGCGCGCCgcaaggccguGCGCGacCAGC-UGcGGCa -3'
miRNA:   3'- -UGaGCGCGCGG----------UGCGU--GUCGuAC-CCG- -5'
6840 5' -59.8 NC_001875.2 + 77743 0.66 0.693299
Target:  5'- --aCGUGCGCUggcaGCGCAUcgacccCGUGGGCg -3'
miRNA:   3'- ugaGCGCGCGG----UGCGUGuc----GUACCCG- -5'
6840 5' -59.8 NC_001875.2 + 75956 0.67 0.612547
Target:  5'- gAC-CGCG-GCCAUcgGCACAGUcgagGGGCu -3'
miRNA:   3'- -UGaGCGCgCGGUG--CGUGUCGua--CCCG- -5'
6840 5' -59.8 NC_001875.2 + 74651 0.66 0.693299
Target:  5'- ---aGCGUGCCAUGgcCGgGGC-UGGGCg -3'
miRNA:   3'- ugagCGCGCGGUGC--GUgUCGuACCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.