Results 101 - 120 of 250 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6840 | 5' | -59.8 | NC_001875.2 | + | 74495 | 0.72 | 0.354991 |
Target: 5'- uACUUGCGguuuCGCCGCGCGCAGCGcUGccGCa -3' miRNA: 3'- -UGAGCGC----GCGGUGCGUGUCGU-ACc-CG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 74315 | 0.71 | 0.412412 |
Target: 5'- ---gGCGCGCagGCGCcggACAGCAcGGGCg -3' miRNA: 3'- ugagCGCGCGg-UGCG---UGUCGUaCCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 74150 | 0.66 | 0.722006 |
Target: 5'- uUUCGCGUGauGCGCAUcuacuacaacgaaGGCggGGGCa -3' miRNA: 3'- uGAGCGCGCggUGCGUG-------------UCGuaCCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 74076 | 0.68 | 0.562282 |
Target: 5'- --gUGCGCGCCccuCGCAaaaccuGCAguUGGGCa -3' miRNA: 3'- ugaGCGCGCGGu--GCGUgu----CGU--ACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 73025 | 0.74 | 0.257843 |
Target: 5'- --aCGCGCGCauuucCGCGUGCAGC-UGGGCc -3' miRNA: 3'- ugaGCGCGCG-----GUGCGUGUCGuACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 72957 | 0.66 | 0.720044 |
Target: 5'- uUUCGgGCGCCACGgCGCGccugauuagguugcGCAaaaacccGGGCa -3' miRNA: 3'- uGAGCgCGCGGUGC-GUGU--------------CGUa------CCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 72555 | 0.66 | 0.693299 |
Target: 5'- --aCGgGCGCUGCGgGCgcgGGCGcGGGCg -3' miRNA: 3'- ugaGCgCGCGGUGCgUG---UCGUaCCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 72254 | 0.68 | 0.562282 |
Target: 5'- uGCUCGCGCacgucgGCCACGCuGCAGCGc---- -3' miRNA: 3'- -UGAGCGCG------CGGUGCG-UGUCGUacccg -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 71941 | 0.69 | 0.513195 |
Target: 5'- gAC-CGCGCGCUccGCGCGCAGCcUGucGCc -3' miRNA: 3'- -UGaGCGCGCGG--UGCGUGUCGuACc-CG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 71897 | 0.66 | 0.683292 |
Target: 5'- uACUCGuCGaccaGCCGCGaCACGGCAcugaUGaGCg -3' miRNA: 3'- -UGAGC-GCg---CGGUGC-GUGUCGU----ACcCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 70234 | 0.69 | 0.542464 |
Target: 5'- uCUCGCcaaGCCAgCGCGCGGUgaucGGGCg -3' miRNA: 3'- uGAGCGcg-CGGU-GCGUGUCGua--CCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 69736 | 0.68 | 0.592349 |
Target: 5'- -aUCGUG-GCCACGCGCcccuGCGUGGuCa -3' miRNA: 3'- ugAGCGCgCGGUGCGUGu---CGUACCcG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 69716 | 0.67 | 0.632802 |
Target: 5'- --aCGCGCGUCGCGCuaacguuugcACGGaaucGGGCg -3' miRNA: 3'- ugaGCGCGCGGUGCG----------UGUCgua-CCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 69236 | 0.67 | 0.653056 |
Target: 5'- --aCGCGCGCUGUGCcgacuugcccgACGGCAcGGGCc -3' miRNA: 3'- ugaGCGCGCGGUGCG-----------UGUCGUaCCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 69066 | 0.69 | 0.517062 |
Target: 5'- gACUUGCGUGCaaACGCACcccugcgcguucaacGGCGcGGGCc -3' miRNA: 3'- -UGAGCGCGCGg-UGCGUG---------------UCGUaCCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 68566 | 0.67 | 0.653056 |
Target: 5'- gGCg-GCG-GUCGCGCACcGCGUGGcGCc -3' miRNA: 3'- -UGagCGCgCGGUGCGUGuCGUACC-CG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 66890 | 0.74 | 0.279253 |
Target: 5'- aAUUCGCgGCGCCAucguguuuugcauaaUGCugGGCAcGGGCa -3' miRNA: 3'- -UGAGCG-CGCGGU---------------GCGugUCGUaCCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 66291 | 0.69 | 0.517062 |
Target: 5'- cGCUC-UGCGUCAaaUGCGCggccggcgaguugauGGCGUGGGCg -3' miRNA: 3'- -UGAGcGCGCGGU--GCGUG---------------UCGUACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 66086 | 0.67 | 0.639895 |
Target: 5'- cGC-CGCGCacgaauacgccgagGCC-CGCGCGGC--GGGCg -3' miRNA: 3'- -UGaGCGCG--------------CGGuGCGUGUCGuaCCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 66054 | 0.66 | 0.700275 |
Target: 5'- cAC-CGCGCGCCgACGCcGCGcGCGUGcucgcccagccgccGGCu -3' miRNA: 3'- -UGaGCGCGCGG-UGCG-UGU-CGUAC--------------CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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