Results 41 - 60 of 250 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6840 | 5' | -59.8 | NC_001875.2 | + | 113562 | 0.74 | 0.27027 |
Target: 5'- aACggCGCG-GUCGCGCACGGCGcgccauUGGGCc -3' miRNA: 3'- -UGa-GCGCgCGGUGCGUGUCGU------ACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 85700 | 0.74 | 0.263997 |
Target: 5'- aGCUUGCGCGCCGCgaucgacugguuGCcCAGCGUGGuCa -3' miRNA: 3'- -UGAGCGCGCGGUG------------CGuGUCGUACCcG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 116894 | 0.74 | 0.257234 |
Target: 5'- aACUCuucgucuGCGCuaGCCGCGCGCGGCggGuGGCg -3' miRNA: 3'- -UGAG-------CGCG--CGGUGCGUGUCGuaC-CCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 51922 | 0.75 | 0.240083 |
Target: 5'- --aUGC-CGCCGCuGCACAGCGUGcGGCg -3' miRNA: 3'- ugaGCGcGCGGUG-CGUGUCGUAC-CCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 45705 | 0.76 | 0.212762 |
Target: 5'- cGCcgCGCGCGCCGCGCACuGCcgauGGCc -3' miRNA: 3'- -UGa-GCGCGCGGUGCGUGuCGuac-CCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 48739 | 0.71 | 0.390419 |
Target: 5'- --gCGCGgGCCA-GCACAGUagcacguacgacgugGUGGGCa -3' miRNA: 3'- ugaGCGCgCGGUgCGUGUCG---------------UACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 113398 | 0.71 | 0.390419 |
Target: 5'- gAUUCGCGCGCCACGCggaccGCGccucgcgccgaguacGCAaUGGGa -3' miRNA: 3'- -UGAGCGCGCGGUGCG-----UGU---------------CGU-ACCCg -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 14417 | 0.7 | 0.465956 |
Target: 5'- --aUGgGCGCCAC---CGGCAUGGGCg -3' miRNA: 3'- ugaGCgCGCGGUGcguGUCGUACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 93277 | 0.7 | 0.456778 |
Target: 5'- gUUUGCGgGCgGC-CACGGguUGGGCa -3' miRNA: 3'- uGAGCGCgCGgUGcGUGUCguACCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 13371 | 0.7 | 0.456778 |
Target: 5'- aGCUgGUGCGCaccguuucUACGCACGGCAccaGGCg -3' miRNA: 3'- -UGAgCGCGCG--------GUGCGUGUCGUac-CCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 97740 | 0.7 | 0.447697 |
Target: 5'- aGCgCGCGCGCuCGUGCAacccCGGCAcGGGCg -3' miRNA: 3'- -UGaGCGCGCG-GUGCGU----GUCGUaCCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 114019 | 0.7 | 0.447697 |
Target: 5'- cCUCGCGCauggcgGCCGCGCGguccagauggUAGCAcgcGGGCu -3' miRNA: 3'- uGAGCGCG------CGGUGCGU----------GUCGUa--CCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 33480 | 0.7 | 0.438717 |
Target: 5'- -gUgGCGCGCCGCGCGCug---GGGUg -3' miRNA: 3'- ugAgCGCGCGGUGCGUGucguaCCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 36656 | 0.71 | 0.429842 |
Target: 5'- gGC-CGCGuCGUgCGCGCugAGCucgGGGCg -3' miRNA: 3'- -UGaGCGC-GCG-GUGCGugUCGua-CCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 39241 | 0.71 | 0.4272 |
Target: 5'- cAUUCGCGCGCgCAUGCugGagaaacugcgcgacGCG-GGGCg -3' miRNA: 3'- -UGAGCGCGCG-GUGCGugU--------------CGUaCCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 42737 | 0.71 | 0.412412 |
Target: 5'- -gUCGCGCGCgGCGaCGC-GCAUGGugaGCg -3' miRNA: 3'- ugAGCGCGCGgUGC-GUGuCGUACC---CG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 30426 | 0.71 | 0.412412 |
Target: 5'- aACUCGUGCaGCaaagcguccaACGCGCAGC-UGGcGCg -3' miRNA: 3'- -UGAGCGCG-CGg---------UGCGUGUCGuACC-CG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 128689 | 0.71 | 0.412412 |
Target: 5'- uACUCGCcgcccgacgccGCGUC-CGCGCAGC--GGGCu -3' miRNA: 3'- -UGAGCG-----------CGCGGuGCGUGUCGuaCCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 74315 | 0.71 | 0.412412 |
Target: 5'- ---gGCGCGCagGCGCcggACAGCAcGGGCg -3' miRNA: 3'- ugagCGCGCGg-UGCG---UGUCGUaCCCG- -5' |
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6840 | 5' | -59.8 | NC_001875.2 | + | 53885 | 0.71 | 0.395426 |
Target: 5'- -gUCGUGCgGCCGC-CGCGGCgcaaauaauuGUGGGCg -3' miRNA: 3'- ugAGCGCG-CGGUGcGUGUCG----------UACCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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