miRNA display CGI


Results 61 - 80 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6840 5' -59.8 NC_001875.2 + 30426 0.71 0.412412
Target:  5'- aACUCGUGCaGCaaagcguccaACGCGCAGC-UGGcGCg -3'
miRNA:   3'- -UGAGCGCG-CGg---------UGCGUGUCGuACC-CG- -5'
6840 5' -59.8 NC_001875.2 + 42737 0.71 0.412412
Target:  5'- -gUCGCGCGCgGCGaCGC-GCAUGGugaGCg -3'
miRNA:   3'- ugAGCGCGCGgUGC-GUGuCGUACC---CG- -5'
6840 5' -59.8 NC_001875.2 + 81344 0.7 0.484594
Target:  5'- cGCggCGCGCugguGCCGCGCGCAcGCGccGGCc -3'
miRNA:   3'- -UGa-GCGCG----CGGUGCGUGU-CGUacCCG- -5'
6840 5' -59.8 NC_001875.2 + 225 0.69 0.494046
Target:  5'- -gUCGCGCGCCaucaaauuGCGCACGuuuuucagcGCGgcgGGGUc -3'
miRNA:   3'- ugAGCGCGCGG--------UGCGUGU---------CGUa--CCCG- -5'
6840 5' -59.8 NC_001875.2 + 54457 0.69 0.494046
Target:  5'- aGC-CGCgGCGCC--GCACAGCGUGugcGGCa -3'
miRNA:   3'- -UGaGCG-CGCGGugCGUGUCGUAC---CCG- -5'
6840 5' -59.8 NC_001875.2 + 42164 0.69 0.494046
Target:  5'- -gUCGCGCGgUcaaacguaaacgACGCGCGGU-UGGGCg -3'
miRNA:   3'- ugAGCGCGCgG------------UGCGUGUCGuACCCG- -5'
6840 5' -59.8 NC_001875.2 + 32908 0.69 0.503581
Target:  5'- cACgCGCGCGUCGCGCACGcGCAaccGCg -3'
miRNA:   3'- -UGaGCGCGCGGUGCGUGU-CGUaccCG- -5'
6840 5' -59.8 NC_001875.2 + 43982 0.69 0.503581
Target:  5'- -gUCGCcgacCGCCACGgACAGCccgacGGGCg -3'
miRNA:   3'- ugAGCGc---GCGGUGCgUGUCGua---CCCG- -5'
6840 5' -59.8 NC_001875.2 + 50844 0.69 0.503581
Target:  5'- cGCgUCGCGCGCCuuuuucaGCAgCAGCuuuugcucGGGCg -3'
miRNA:   3'- -UG-AGCGCGCGGug-----CGU-GUCGua------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 37112 0.69 0.513195
Target:  5'- uGCgggCGCgGCGCCGCGC-CGGCGUuuGCg -3'
miRNA:   3'- -UGa--GCG-CGCGGUGCGuGUCGUAccCG- -5'
6840 5' -59.8 NC_001875.2 + 114951 0.7 0.47523
Target:  5'- -aUCGCgGCGCCGCuGCGCGuacGCAUacaaccagGGGCg -3'
miRNA:   3'- ugAGCG-CGCGGUG-CGUGU---CGUA--------CCCG- -5'
6840 5' -59.8 NC_001875.2 + 122199 0.7 0.47523
Target:  5'- aGCUCGCGaaaCACGCACGGCGcGcGCa -3'
miRNA:   3'- -UGAGCGCgcgGUGCGUGUCGUaCcCG- -5'
6840 5' -59.8 NC_001875.2 + 39241 0.71 0.4272
Target:  5'- cAUUCGCGCGCgCAUGCugGagaaacugcgcgacGCG-GGGCg -3'
miRNA:   3'- -UGAGCGCGCG-GUGCGugU--------------CGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 36656 0.71 0.429842
Target:  5'- gGC-CGCGuCGUgCGCGCugAGCucgGGGCg -3'
miRNA:   3'- -UGaGCGC-GCG-GUGCGugUCGua-CCCG- -5'
6840 5' -59.8 NC_001875.2 + 33480 0.7 0.438717
Target:  5'- -gUgGCGCGCCGCGCGCug---GGGUg -3'
miRNA:   3'- ugAgCGCGCGGUGCGUGucguaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 114019 0.7 0.447697
Target:  5'- cCUCGCGCauggcgGCCGCGCGguccagauggUAGCAcgcGGGCu -3'
miRNA:   3'- uGAGCGCG------CGGUGCGU----------GUCGUa--CCCG- -5'
6840 5' -59.8 NC_001875.2 + 97740 0.7 0.447697
Target:  5'- aGCgCGCGCGCuCGUGCAacccCGGCAcGGGCg -3'
miRNA:   3'- -UGaGCGCGCG-GUGCGU----GUCGUaCCCG- -5'
6840 5' -59.8 NC_001875.2 + 13371 0.7 0.456778
Target:  5'- aGCUgGUGCGCaccguuucUACGCACGGCAccaGGCg -3'
miRNA:   3'- -UGAgCGCGCG--------GUGCGUGUCGUac-CCG- -5'
6840 5' -59.8 NC_001875.2 + 93277 0.7 0.456778
Target:  5'- gUUUGCGgGCgGC-CACGGguUGGGCa -3'
miRNA:   3'- uGAGCGCgCGgUGcGUGUCguACCCG- -5'
6840 5' -59.8 NC_001875.2 + 14417 0.7 0.465956
Target:  5'- --aUGgGCGCCAC---CGGCAUGGGCg -3'
miRNA:   3'- ugaGCgCGCGGUGcguGUCGUACCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.